Literature DB >> 33383035

Archaea: The Final Frontier of Chromatin.

Shawn P Laursen1, Samuel Bowerman2, Karolin Luger3.   

Abstract

The three domains of life employ various strategies to organize their genomes. Archaea utilize features similar to those found in both eukaryotic and bacterial chromatin to organize their DNA. In this review, we discuss the current state of research regarding the structure-function relationships of several archaeal chromatin proteins (histones, Alba, Cren7, and Sul7d). We address individual structures as well as inferred models for higher-order chromatin formation. Each protein introduces a unique phenotype to chromatin organization, and these structures are put into the context of in vivo and in vitro data. We close by discussing the present gaps in knowledge that are preventing further studies of the organization of archaeal chromatin, on both the organismal and domain level.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Alba; archaea; chromatin; histones; protein DNA interactions

Mesh:

Substances:

Year:  2020        PMID: 33383035      PMCID: PMC7987875          DOI: 10.1016/j.jmb.2020.166791

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  85 in total

1.  Spheroid chromatin units (v bodies).

Authors:  A L Olins; D E Olins
Journal:  Science       Date:  1974-01-25       Impact factor: 47.728

Review 2.  Picking a nucleosome lock: Sequence- and structure-specific recognition of the nucleosome.

Authors:  Matthew M Makowski; Guillaume Gaullier; Karolin Luger
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

3.  An ancestral nuclear protein assembly: crystal structure of the Methanopyrus kandleri histone.

Authors:  R L Fahrner; D Cascio; J A Lake; A Slesarev
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

4.  Growth-phase-dependent synthesis of histones in the archaeon Methanothermus fervidus.

Authors:  K Sandman; R A Grayling; B Dobrinski; R Lurz; J N Reeve
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-20       Impact factor: 11.205

5.  A single-base resolution map of an archaeal transcriptome.

Authors:  Omri Wurtzel; Rajat Sapra; Feng Chen; Yiwen Zhu; Blake A Simmons; Rotem Sorek
Journal:  Genome Res       Date:  2009-11-02       Impact factor: 9.043

6.  Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction.

Authors:  Iain Anderson; Jason Rodriguez; Dwi Susanti; Iris Porat; Claudia Reich; Luke E Ulrich; James G Elkins; Kostas Mavromatis; Athanasios Lykidis; Edwin Kim; Linda S Thompson; Matt Nolan; Miriam Land; Alex Copeland; Alla Lapidus; Susan Lucas; Chris Detter; Igor B Zhulin; Gary J Olsen; William Whitman; Biswarup Mukhopadhyay; James Bristow; Nikos Kyrpides
Journal:  J Bacteriol       Date:  2008-02-08       Impact factor: 3.490

7.  Interactions of archaeal chromatin proteins Alba1 and Alba2 with nucleic acids.

Authors:  Miha Črnigoj; Zdravko Podlesek; Mateja Zorko; Roman Jerala; Gregor Anderluh; Nataša Poklar Ulrih
Journal:  PLoS One       Date:  2013-02-28       Impact factor: 3.240

8.  Archaea on human skin.

Authors:  Alexander J Probst; Anna K Auerbach; Christine Moissl-Eichinger
Journal:  PLoS One       Date:  2013-06-12       Impact factor: 3.240

9.  Biochemical and structural characterization of Cren7, a novel chromatin protein conserved among Crenarchaea.

Authors:  Li Guo; Yingang Feng; Zhenfeng Zhang; Hongwei Yao; Yuanming Luo; Jinfeng Wang; Li Huang
Journal:  Nucleic Acids Res       Date:  2007-12-20       Impact factor: 16.971

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  7 in total

1.  Interplay between Alba and Cren7 Regulates Chromatin Compaction in Sulfolobus solfataricus.

Authors:  Marc Kenneth M Cajili; Eloise I Prieto
Journal:  Biomolecules       Date:  2022-03-22

Review 2.  Viral histones: pickpocket's prize or primordial progenitor?

Authors:  Paul B Talbert; Karim-Jean Armache; Steven Henikoff
Journal:  Epigenetics Chromatin       Date:  2022-05-28       Impact factor: 5.465

3.  Extended Archaeal Histone-Based Chromatin Structure Regulates Global Gene Expression in Thermococcus kodakarensis.

Authors:  Travis J Sanders; Fahad Ullah; Alexandra M Gehring; Brett W Burkhart; Robert L Vickerman; Sudili Fernando; Andrew F Gardner; Asa Ben-Hur; Thomas J Santangelo
Journal:  Front Microbiol       Date:  2021-05-13       Impact factor: 5.640

4.  An archaeal histone-like protein regulates gene expression in response to salt stress.

Authors:  Saaz Sakrikar; Amy K Schmid
Journal:  Nucleic Acids Res       Date:  2021-12-16       Impact factor: 16.971

5.  Lysine Methylation Modulates the Interaction of Archaeal Chromatin Protein Cren7 With DNA.

Authors:  Niannian Ding; Yuanyuan Chen; Yindi Chu; Cheng Zhong; Li Huang; Zhenfeng Zhang
Journal:  Front Microbiol       Date:  2022-03-03       Impact factor: 5.640

Review 6.  Small Prokaryotic DNA-Binding Proteins Protect Genome Integrity throughout the Life Cycle.

Authors:  Katja Molan; Darja Žgur Bertok
Journal:  Int J Mol Sci       Date:  2022-04-04       Impact factor: 5.923

Review 7.  Single-Molecule/Cell Analyses Reveal Principles of Genome-Folding Mechanisms in the Three Domains of Life.

Authors:  Hugo Maruyama; Takayuki Nambu; Chiho Mashimo; Toshinori Okinaga; Kunio Takeyasu
Journal:  Int J Mol Sci       Date:  2021-12-14       Impact factor: 5.923

  7 in total

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