| Literature DB >> 32210357 |
Sung Ho Boo1,2, Yoon Ki Kim3,4.
Abstract
Many studies have highlighted the importance of the tight regulation of mRNA stability in the control of gene expression. mRNA stability largely depends on the mRNA nucleotide sequence, which affects the secondary and tertiary structures of the mRNAs, and the accessibility of various RNA-binding proteins to the mRNAs. Recent advances in high-throughput RNA-sequencing techniques have resulted in the elucidation of the important roles played by mRNA modifications and mRNA nucleotide sequences in regulating mRNA stability. To date, hundreds of different RNA modifications have been characterized. Among them, several RNA modifications, including N6-methyladenosine (m6A), N6,2'-O-dimethyladenosine (m6Am), 8-oxo-7,8-dihydroguanosine (8-oxoG), pseudouridine (Ψ), 5-methylcytidine (m5C), and N4-acetylcytidine (ac4C), have been shown to regulate mRNA stability, consequently affecting diverse cellular and biological processes. In this review, we discuss our current understanding of the molecular mechanisms underlying the regulation of mammalian mRNA stability by various RNA modifications.Entities:
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Year: 2020 PMID: 32210357 PMCID: PMC7156397 DOI: 10.1038/s12276-020-0407-z
Source DB: PubMed Journal: Exp Mol Med ISSN: 1226-3613 Impact factor: 8.718
Fig. 1Chemical structures of RNA modifications affecting mRNA stability.
The chemical structures of the six RNA modifications discussed in this review are shown. The modified chemical groups are depicted in red. The known writers (or modification inducers), readers (or RBPs) involved in mRNA stability, and erasers for each RNA modification are also summarized.
Fig. 2Molecular mechanisms underlying the regulation of mRNA stability through diverse RNA modifications.
a N-methyladenosine (m6A): in general, YTH domain-containing proteins destabilize m6A-containing mRNAs. When m6A is recognized by YTHDF2, the degradation of m6A-containing mRNAs is initiated by deadenylation through the CCR4–NOT complex. If the YTHDF2-bound m6A-containing mRNA harbors an HRSP12-binding site, the degradation of the mRNA is preferentially initiated through an endoribonucleolytic cleavage reaction mediated by the RNase P/MRP complex. YTHDC2 binds to m6A and recruits XRN1, thereby triggering 5′–3′ exoribonucleolytic cleavage. In contrast, m6A-containing mRNA can be stabilized by other m6A reader proteins or RBPs, including IGF2BP, FMRP, G3BP1, PRRC2A, and HuR. b N,2′-O-dimethyladenosine (m6Am): the presence of m6Am at the 5′-end of mRNA blocks its accessibility to DCP2, thus stabilizing the mRNA. m6Am also enables mRNA to become more resistant to microRNA-mediated mRNA degradation. c 8-Oxo-7,8-dihydroguanosine (8-oxoG): the presence of 8-oxoG in mRNA causes ribosome stalling, thereby triggering NGD. Alternatively, 8-oxoG-containing mRNAs are degraded through 8-oxoG reader proteins, such as YBX1 and AUF1. d Pseudouridine (Ψ): Ψ can stabilize or destabilize mRNA. In particular, Ψ on PTCs results in the inhibition of NMD. As a consequence, the mRNA is stabilized. e 5-Methylcytidine (m5C): YBX1 specifically recognizes m5C on mRNA and recruits either PABPC1 or HuR, thereby stabilizing the mRNA. f N4-acetylcytidine (ac4C). The presence of ac4C stabilizes mRNA by unknown mechanisms.