Literature DB >> 30518847

Structural and molecular mechanisms for the control of eukaryotic 5'-3' mRNA decay.

Jeffrey S Mugridge1, Jeff Coller2, John D Gross3.   

Abstract

5'-3' RNA decay pathways are critical for quality control and regulation of gene expression. Structural and biochemical studies have provided insights into the key nucleases that carry out deadenylation, decapping, and exonucleolysis during 5'-3' decay, but detailed understanding of how these activities are coordinated is only beginning to emerge. Here we review recent mechanistic insights into the control of 5'-3' RNA decay, including coupling between translation and decay, coordination between the complexes and activities that process 5' and 3' RNA termini, conformational control of enzymatic activity, liquid phase separation, and RNA modifications.

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Year:  2018        PMID: 30518847     DOI: 10.1038/s41594-018-0164-z

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  113 in total

Review 1.  Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes.

Authors:  Søren Lykke-Andersen; Torben Heick Jensen
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09-23       Impact factor: 94.444

Review 2.  From birth to death: the complex lives of eukaryotic mRNAs.

Authors:  Melissa J Moore
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

3.  The cryo-EM structure of a ribosome-Ski2-Ski3-Ski8 helicase complex.

Authors:  Christian Schmidt; Eva Kowalinski; Vivekanandan Shanmuganathan; Quentin Defenouillère; Katharina Braunger; André Heuer; Markus Pech; Abdelkader Namane; Otto Berninghausen; Micheline Fromont-Racine; Alain Jacquier; Elena Conti; Thomas Becker; Roland Beckmann
Journal:  Science       Date:  2016-12-16       Impact factor: 47.728

Review 4.  RNA tales - how embryos read and discard messages from mom.

Authors:  Vladimir Despic; Karla M Neugebauer
Journal:  J Cell Sci       Date:  2018-03-01       Impact factor: 5.285

Review 5.  AU-rich elements: characterization and importance in mRNA degradation.

Authors:  C Y Chen; A B Shyu
Journal:  Trends Biochem Sci       Date:  1995-11       Impact factor: 13.807

6.  mRNA decapping factors and the exonuclease Xrn2 function in widespread premature termination of RNA polymerase II transcription.

Authors:  Kris Brannan; Hyunmin Kim; Benjamin Erickson; Kira Glover-Cutter; Soojin Kim; Nova Fong; Lauren Kiemele; Kirk Hansen; Richard Davis; Jens Lykke-Andersen; David L Bentley
Journal:  Mol Cell       Date:  2012-04-05       Impact factor: 17.970

7.  Dcp2 decapping protein modulates mRNA stability of the critical interferon regulatory factor (IRF) IRF-7.

Authors:  You Li; Jihong Dai; Mangen Song; Patricia Fitzgerald-Bocarsly; Megerditch Kiledjian
Journal:  Mol Cell Biol       Date:  2012-01-17       Impact factor: 4.272

Review 8.  RNA degradation in Saccharomyces cerevisae.

Authors:  Roy Parker
Journal:  Genetics       Date:  2012-07       Impact factor: 4.562

Review 9.  Emerging roles for RNA degradation in viral replication and antiviral defense.

Authors:  Emma Abernathy; Britt Glaunsinger
Journal:  Virology       Date:  2015-02-24       Impact factor: 3.616

Review 10.  Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors.

Authors:  John C Zinder; Christopher D Lima
Journal:  Genes Dev       Date:  2017-01-15       Impact factor: 11.361

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  43 in total

1.  Global Profiling of Cellular Substrates of Human Dcp2.

Authors:  Yang Luo; Jeremy A Schofield; Matthew D Simon; Sarah A Slavoff
Journal:  Biochemistry       Date:  2020-05-14       Impact factor: 3.162

2.  InsP7 is a small-molecule regulator of NUDT3-mediated mRNA decapping and processing-body dynamics.

Authors:  Soumyadip Sahu; Zhenzhen Wang; Xinfu Jiao; Chunfang Gu; Nikolaus Jork; Christopher Wittwer; Xingyao Li; Sarah Hostachy; Dorothea Fiedler; Huanchen Wang; Henning J Jessen; Megerditch Kiledjian; Stephen B Shears
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-29       Impact factor: 11.205

3.  Crystal structure and functional properties of the human CCR4-CAF1 deadenylase complex.

Authors:  Ying Chen; Elena Khazina; Elisa Izaurralde; Oliver Weichenrieder
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

4.  The NBDY Microprotein Regulates Cellular RNA Decapping.

Authors:  Zhenkun Na; Yang Luo; Jeremy A Schofield; Stephanie Smelyansky; Alexandra Khitun; Sowndarya Muthukumar; Eugene Valkov; Matthew D Simon; Sarah A Slavoff
Journal:  Biochemistry       Date:  2020-10-15       Impact factor: 3.162

5.  Antagonistic control of Caenorhabditis elegans germline stem cell proliferation and differentiation by PUF proteins FBF-1 and FBF-2.

Authors:  Xiaobo Wang; Mary Ellenbecker; Benjamin Hickey; Nicholas J Day; Emily Osterli; Mikaya Terzo; Ekaterina Voronina
Journal:  Elife       Date:  2020-08-17       Impact factor: 8.140

6.  Feedback to the central dogma: cytoplasmic mRNA decay and transcription are interdependent processes.

Authors:  Ella Hartenian; Britt A Glaunsinger
Journal:  Crit Rev Biochem Mol Biol       Date:  2019-10-27       Impact factor: 8.250

Review 7.  Making ends meet: New functions of mRNA secondary structure.

Authors:  Dmitri N Ermolenko; David H Mathews
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-06-29       Impact factor: 9.957

8.  Synthetic protein quality control to enhance full-length translation in bacteria.

Authors:  Jina Yang; Yong Hee Han; Jongwon Im; Sang Woo Seo
Journal:  Nat Chem Biol       Date:  2021-02-04       Impact factor: 15.040

9.  Discovery of cellular substrates of human RNA-decapping enzyme DCP2 using a stapled bicyclic peptide inhibitor.

Authors:  Yang Luo; Jeremy A Schofield; Zhenkun Na; Tanja Hann; Matthew D Simon; Sarah A Slavoff
Journal:  Cell Chem Biol       Date:  2020-12-22       Impact factor: 8.116

10.  Targeting KIT by frameshifting mRNA transcripts as a therapeutic strategy for aggressive mast cell neoplasms.

Authors:  Douglas B Snider; Greer K Arthur; Guido H Falduto; Ana Olivera; Lauren C Ehrhardt-Humbert; Emmaline Smith; Cierra Smith; Dean D Metcalfe; Glenn Cruse
Journal:  Mol Ther       Date:  2021-08-08       Impact factor: 11.454

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