Literature DB >> 16554824

Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation.

Meenakshi K Doma1, Roy Parker.   

Abstract

A fundamental aspect of the biogenesis and function of eukaryotic messenger RNA is the quality control systems that recognize and degrade non-functional mRNAs. Eukaryotic mRNAs where translation termination occurs too soon (nonsense-mediated decay) or fails to occur (non-stop decay) are rapidly degraded. We show that yeast mRNAs with stalls in translation elongation are recognized and targeted for endonucleolytic cleavage, referred to as 'no-go decay'. The cleavage triggered by no-go decay is dependent on translation and involves Dom34p and Hbs1p. Dom34p and Hbs1p are similar to the translation termination factors eRF1 and eRF3 (refs 3, 4), indicating that these proteins might function in recognizing the stalled ribosome and triggering endonucleolytic cleavage. No-go decay provides a mechanism for clearing the cell of stalled translation elongation complexes, which could occur as a result of damaged mRNAs or ribosomes, or as a mechanism of post-transcriptional control.

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Year:  2006        PMID: 16554824      PMCID: PMC1839849          DOI: 10.1038/nature04530

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  28 in total

1.  Exosome-mediated recognition and degradation of mRNAs lacking a termination codon.

Authors:  Ambro van Hoof; Pamela A Frischmeyer; Harry C Dietz; Roy Parker
Journal:  Science       Date:  2002-03-22       Impact factor: 47.728

Review 2.  A salvage pathway for protein structures: tmRNA and trans-translation.

Authors:  Jeffrey H Withey; David I Friedman
Journal:  Annu Rev Microbiol       Date:  2003-05-01       Impact factor: 15.500

3.  Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control.

Authors:  Christopher S Hayes; Robert T Sauer
Journal:  Mol Cell       Date:  2003-10       Impact factor: 17.970

Review 4.  Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics.

Authors:  Lynne E Maquat
Journal:  Nat Rev Mol Cell Biol       Date:  2004-02       Impact factor: 94.444

5.  Novel G-protein complex whose requirement is linked to the translational status of the cell.

Authors:  Anne Carr-Schmid; Christine Pfund; Elizabeth A Craig; Terri Goss Kinzy
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

Review 6.  Eukaryotic release factors (eRFs) history.

Authors:  Sergei Inge-Vechtomov; Galina Zhouravleva; Michel Philippe
Journal:  Biol Cell       Date:  2003 May-Jun       Impact factor: 4.458

7.  An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae.

Authors:  Jason W Harger; Jonathan D Dinman
Journal:  RNA       Date:  2003-08       Impact factor: 4.942

8.  Nascent-peptide-mediated ribosome stalling at a stop codon induces mRNA cleavage resulting in nonstop mRNA that is recognized by tmRNA.

Authors:  Takafumi Sunohara; Kaoru Jojima; Yasufumi Yamamoto; Toshifumi Inada; Hiroji Aiba
Journal:  RNA       Date:  2004-03       Impact factor: 4.942

9.  Assessing functional divergence in EF-1alpha and its paralogs in eukaryotes and archaebacteria.

Authors:  Yuji Inagaki; Christian Blouin; Edward Susko; Andrew J Roger
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

10.  Translation termination factor eRF3 mediates mRNA decay through the regulation of deadenylation.

Authors:  Nao Hosoda; Tetsuo Kobayashi; Naoyuki Uchida; Yuji Funakoshi; Yoshiko Kikuchi; Shinichi Hoshino; Toshiaki Katada
Journal:  J Biol Chem       Date:  2003-08-15       Impact factor: 5.157

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  312 in total

1.  Translation drives mRNA quality control.

Authors:  Christopher J Shoemaker; Rachel Green
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

2.  Kinetic analysis reveals the ordered coupling of translation termination and ribosome recycling in yeast.

Authors:  Christopher J Shoemaker; Rachel Green
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-05       Impact factor: 11.205

3.  40S subunit dissociation and proteasome-dependent RNA degradation in nonfunctional 25S rRNA decay.

Authors:  Kotaro Fujii; Makoto Kitabatake; Tomoko Sakata; Mutsuhito Ohno
Journal:  EMBO J       Date:  2012-04-13       Impact factor: 11.598

Review 4.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

Review 5.  Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism.

Authors:  Rafal Tomecki; Andrzej Dziembowski
Journal:  RNA       Date:  2010-07-30       Impact factor: 4.942

Review 6.  All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay.

Authors:  Joel G Belasco
Journal:  Nat Rev Mol Cell Biol       Date:  2010-06-03       Impact factor: 94.444

Review 7.  The exozyme model: a continuum of functionally distinct complexes.

Authors:  Daniel L Kiss; Erik D Andrulis
Journal:  RNA       Date:  2010-11-10       Impact factor: 4.942

Review 8.  Genome-wide technology for determining RNA stability in mammalian cells: historical perspective and recent advantages based on modified nucleotide labeling.

Authors:  Hidenori Tani; Nobuyoshi Akimitsu
Journal:  RNA Biol       Date:  2012-10-01       Impact factor: 4.652

9.  Dom34 rescues ribosomes in 3' untranslated regions.

Authors:  Nicholas R Guydosh; Rachel Green
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

10.  Cryo-EM structure of the mammalian eukaryotic release factor eRF1-eRF3-associated termination complex.

Authors:  Derek Taylor; Anett Unbehaun; Wen Li; Sanchaita Das; Jianlin Lei; Hstau Y Liao; Robert A Grassucci; Tatyana V Pestova; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

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