| Literature DB >> 32024163 |
Wiktor Zierkiewicz1, Mariusz Michalczyk1, Steve Scheiner2.
Abstract
: A TrF2 group (Tr = B, Al, Ga, In, Tl) is placed on one of the α positions of naphthalene, and its ability to engage in a triel bond (TrB) with a weak (NCH) and strong (NC-) nucleophile is assessed by ab initio calculations. As a competitor, an NH2 group is placed on the neighboring Cα, from which point it forms an intramolecular TrB with the TrF2 group. The latter internal TrB reduces the intensity of the π-hole on the Tr atom, decreasing its ability to engage in a second external TrB. The intermolecular TrB is weakened by a factor of about two for the smaller Tr atoms but is less severe for the larger Tl. The external TrB can be quite strong nonetheless; it varies from a minimum of 8 kcal/mol for the weak NCH base, up to as much as 70 kcal/mol for CN-. Likewise, the appearance of an external TrB to a strong base like CN- lessens the ability of the Tr to engage in an internal TrB, to the point where such an intramolecular TrB becomes questionable.Entities:
Keywords: MEP; MP2; intramolecular triel bond; triel bond; π-hole
Mesh:
Substances:
Year: 2020 PMID: 32024163 PMCID: PMC7037318 DOI: 10.3390/molecules25030635
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Structure of (a) C10H7TrF2 and (b) C10H6NH2TrF2.
Structural parameters (distances in Å, angles in degrees), and the NBO value of E(2) for transfer from N to Tr (kcal/mol), and density at Tr···N AIM bond critical point (au), of C10H6NH2TrF2 calculated at the MP2/aug-cc-pVDZ level of theory.
| R(Tr⋅⋅⋅Na) | E(2) | ρBCP | Δθ(C2C1Tr) a | Δθ(C2C3Na) a | ΣθTr b | ΣθN c | R(F⋅⋅⋅HN) | θ(NH⋯F) | |
|---|---|---|---|---|---|---|---|---|---|
| C10H6NH2BF2 | 1.727 | d | 0.098 | −15.6 | −9.4 | 346.8 | 332.4 | 2.435 | 81 |
| C10H6NH2AlF2 | 2.058 | 97.3 | 0.048 | −15.8 | −3.6 | 355.2 | 327.9 | 2.875 | 83 |
| C10H6NH2GaF2 | 2.103 | 58.6 | 0.070 | −13.5 | −3.5 | 356.4 | 329.7 | 2.919 | 85 |
| C10H6NH2InF2 | 2.321 | 51.8 | 0.057 | −9.1 | −1.6 | 358.8 | 327.8 | 3.216 | 87 |
| C10H6NH2TlF2 | 2.443 | 39.1 | 0.052 | −4.9 | −1.8 | 359.9 | 331.8 | 2.243 | 89 |
a change in angle caused by replacement of H by NH2 group. Negative value signifies bend of Tr and N toward one another.b θ(F-Tr-F) + θ(F-Tr-C1) + θ(F-Tr-C1). c θ(H-N-H) + θ(H-N-C3) + θ(H-N-C3). d NBO considers the B⋯N interaction to be a covalent bond.
Figure 2MEPs of (a) C10H7GaF2 and (b) C10H6NH2GaF2. Blue and red regions refer, respectively, to +0.02 and −0.02 au.
Maxima in MEP (kcal/mol) of isolated C10H7TrF2 and C10H6NH2TrF2 monomers calculated at the MP2/aug-cc-pVDZ level of theory.
| Isolated Molecule | VS,max | Isolated Molecule | VS,max | Δ |
|---|---|---|---|---|
| C10H7BF2 | 32.0 | C10H6NH2BF2 | 22.9 | −9.1 |
| C10H7AlF2 | 78.3 | C10H6NH2AlF2 | 45.8 | −32.5 |
| C10H7GaF2 | 65.3 | C10H6NH2GaF2 | 39.2 | −26.1 |
| C10H7InF2 | 70.1 | C10H6NH2InF2 | 50.7 | −19.4 |
| C10H7TlF2 | 52.9 | C10H6NH2TlF2 | 40.0 | −12.9 |
Figure 3Optimized geometries of complexes of NCH with C10H7TrF2 (left) and C10H6NH2BF2 (right) at MP2/aug-cc-pVDZ level.
Structural parameters (distances in Å, angles in degrees) in complexes of C10H7TrF2 with NCH calculated at the MP2/aug-cc-pVDZ level of theory.
| R(Tr⋅⋅⋅N) | θ(C-N⋅⋅⋅Tr) | θ(C1-Tr···N) | ΣθTr a | R(CH···F) | |
|---|---|---|---|---|---|
| HCN⋅⋅⋅C10H7AlF2 | 2.101 | 175.8 | 99.1 | 354.4 | 2.426 |
| HCN⋅⋅⋅C10H7GaF2 | 2.178 | 179.1 | 103.2 | 355.4 | 2.405 |
| HCN⋅⋅⋅C10H7InF2 | 2.399 | 176.0 | 102.3 | 357.4 | 2.471 |
| HCN⋅⋅⋅C10H7TlF2 | 2.541 | 168.1 | 101.4 | 359.1 | 2.335 |
a θ(F-Tr-F) + θ(F-Tr-C1) + θ(F-Tr-C1).
Structural parameters (distances in Å, angles in degrees) in complexes of C10H6NH2TrF2 with NCH calculated at the MP2/aug-cc-pVDZ level.
| R(N⋅⋅⋅Tr) | R(Tr⋅⋅⋅Na) | θ(C-N⋅⋅⋅Tr) | θ(C1-Tr···N) | Δθ(C2C1Tr) a | Δθ(C2C3Na) a | ΣθTr | ΣθN | R(F⋅⋅⋅HN) | |
|---|---|---|---|---|---|---|---|---|---|
| HCN···C10H6NH2AlF2 | 2.221 | 2.115 | 173.2 | 93.6 | −11.1 | −3.9 | 359.9 | 329.7 | 2.656 |
| HCN···C10H6NH2GaF2 | 2.317 | 2.162 | 166.1 | 96.8 | −9.8 | −3.4 | 359.9 | 331.5 | 2.727 |
| HCN···C10H6NH2InF2 | 2.489 | 2.369 | 162.7 | 99.2 | −6.7 | −1.6 | 360.0 | 329.3 | 3.050 |
| HCN···C10H6NH2TlF2 | 2.813 | 2.485 | 94.0 | 91.0 | −2.9 | −1.7 | 359.1 | 332.2 | 2.175 |
a change in angle caused by replacement of H by NH2 group. Negative value signifies bend of Tr and N toward one another.
Binding, interaction, and deformation energies (kcal/mol) and density at the Tr···N bond critical point (au) of naphthalene derivatives complexed with NCH corrected for basis set superposition error (BSSE).
| Eb | Eint | Edef | Eint (CCSD(T)) | ρBCP | |
|---|---|---|---|---|---|
| HCN⋅⋅⋅C10H7AlF2 | −18.08 | −22.36 | 4.28 | −21.26 | 0.035 |
| HCN⋅⋅⋅C10H7GaF2 | −13.60 | −17.01 | 3.41 | −15.86 | 0.049 |
| HCN⋅⋅⋅C10H7InF2 | −13.41 | −15.11 | 1.70 | −14.23 | 0.040 |
| HCN⋅⋅⋅C10H7TlF2 | −8.85 | −9.57 | 0.72 | −8.51 | 0.035 |
| HCN···C10H6NH2AlF2 | −8.10 | −12.25 | 4.15 | −11.41 | 0.026 |
| HCN···C10H6NH2GaF2 | −6.21 | −9.09 | 2.88 | −8.20 | 0.035 |
| HCN···C10H6NH2InF2 | −9.28 | −10.62 | 1.34 | −9.94 | 0.032 |
| HCN···C10H6NH2TlF2 | −8.34 | −8.93 | 0.59 | −8.58 | 0.020 |
Figure 4Optimized geometries of complexes of NC- with C10H7TrF2 (left) and C10H6NH2BF2 (right) at MP2/aug-cc-pVDZ level.
Structural parameters (distances in Å, angles in degrees) in complexes of C10H7TrF2 with NC− calculated at the MP2/aug-cc-pVDZ level of theory.
| R(Tr⋅⋅⋅C) | θ(N-C⋅⋅⋅Tr) | θ(C1-Tr···C) | ΣθTr | R(CH···F) | |
|---|---|---|---|---|---|
| NC−⋅⋅⋅C10H7BF2 | 1.643 | 178.4 | 110.0 | 330.7 | 2.374 |
| NC−⋅⋅⋅C10H7AlF2 | 2.025 | 178.8 | 110.0 | 332.9 | 2.482 |
| NC−⋅⋅⋅C10H7GaF2 | 2.015 | 178.0 | 115.1 | 329.8 | 2.447 |
| NC−⋅⋅⋅C10H7InF2 | 2.204 | 176.0 | 111.3 | 330.3 | 2.217 |
| NC−⋅⋅⋅C10H7TlF2 | 2.205 | 175.8 | 126.0 | 323.1 | 2.116 |
Structural parameters (distances in Å, angles in degrees) in complexes of C10H6NH2TrF2 with NC− calculated at the MP2/aug-cc-pVDZ level of theory.
| R(Tr⋅⋅⋅C) | R(Tr⋅⋅⋅Na) | θ(N-C⋅⋅⋅Tr) | θ(C1-Tr···C) | Δθ(C2C1Tr)a | Δθ(C2C3Na)a | ΣθTr | ΣθN | R(F⋅⋅⋅HN) | |
|---|---|---|---|---|---|---|---|---|---|
| NC−⋅⋅⋅C10H9NBF2 | 1.658 | 2.843 | 179.2 | 109.3 | 4.8 | −0.1 | 337.1 | 336.8 | 2.828 |
| NC−⋅⋅⋅C10H9NAlF2 | 2.067 | 2.302 | 174.5 | 97.6 | −6.8 | −3.8 | 352.3 | 335.4 | 2.446 |
| NC−⋅⋅⋅C10H9NGaF2 | 2.017 | 3.014 | 177.1 | 109.4 | 6.6 | 1.8 | 335.4 | 341.9 | 1.791 |
| NC−⋅⋅⋅C10H9NInF2 | 2.222 | 2.803 | 174.8 | 105.3 | 0.8 | 0.0 | 340.6 | 338.1 | 1.864 |
| NC−⋅⋅⋅C10H9NTlF2 | 2.236 | 2.987 | 173.1 | 112.4 | 4.1 | 1.9 | 334.6 | 341.5 | 1.711 |
a change in angle caused by the replacement of H by the NH2 group. Negative value signifies bend of Tr and N toward one another.
Binding, interaction and deformation energies (kcal/mol) and density at Tr···C bond critical point (au) of naphthalene derivatives complexed with NC− corrected for BSSE.
| Eb | Eint | Edef | Eint (CCSD(T)) | ρBCP | |
|---|---|---|---|---|---|
| NC−⋅⋅⋅C10H7BF2 | −48.22 | −85.31 | 37.09 | −82.05 | 0.133 |
| NC−⋅⋅⋅C10H7AlF2 | −68.96 | −88.08 | 19.12 | −86.61 | 0.059 |
| NC−⋅⋅⋅C10H7GaF2 | −65.75 | −86.32 | 20.57 | −84.53 | 0.092 |
| NC−⋅⋅⋅C10H7InF2 | −65.37 | −83.68 | 18.31 | −82.19 | 0.079 |
| NC−⋅⋅⋅C10H7TlF2 | −56.56 | −76.72 | 20.16 | −74.59 | 0.092 |
| NC−···C10H6NH2BF2 | −21.26 | −78.98 | 57.72 | −76.10 | 0.128 |
| NC−···C10H6NH2AlF2 | −43.54 | −67.21 | 23.67 | −65.93 | 0.055 |
| NC−···C10H6NH2GaF2 | −46.03 | −90.11 | 44.08 | −88.55 | 0.092 |
| NC−···C10H6NH2InF2 | −51.72 | −77.54 | 25.82 | −76.19 | 0.076 |
| NC−···C10H6NH2TlF2 | −49.16 | −72.50 | 23.34 | −70.79 | 0.086 |