Literature DB >> 28892003

Special Issue: Intramolecular Hydrogen Bonding 2017.

Steve Scheiner1.   

Abstract

Even after more than a century of study [1-6], scrutiny, and detailed examination, the H-bond continues [7-12] to evoke a level of fascination that surpasses many other phenomena [...].

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Year:  2017        PMID: 28892003      PMCID: PMC6151796          DOI: 10.3390/molecules22091521

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


Even after more than a century of study [1,2,3,4,5,6], scrutiny, and detailed examination, the H-bond continues [7,8,9,10,11,12] to evoke a level of fascination that surpasses many other phenomena. Perhaps it is the ability of the simple H atom, with but a single electron, to act as a glue that maintains contact between much more complicated species. Or it might be its geometry, which prefers to hold the bridging proton on a direct line between the two heavy atoms. Not to be ignored are the spectral features of the H-bond: the large red shift of the stretching frequency of the covalent A–H bond, coupled with its intensification, or the downfield shift of the proton’s NMR signal. Yet study of this bond is far from complete, with one surprise after another continuing to emerge. As it turns out, the aforementioned red shift, for example, long considered as the trademark of this bond, is not so characteristic after all. H-bonds that shift in the opposite direction, to the blue, have been observed [13,14,15,16] in a variety of systems. The long held belief that only very electronegative atoms like F, O, and N can participate in these bonds has been shattered, as one atom after another, S and Cl and even metals to name just a few, have been added [17,18,19,20] to the rapidly growing list. While H-bonds are typically conceived as interactions between pairs of molecules, there is no reason whatsoever why they cannot occur within the confines of a single molecule. Indeed, such intramolecular H-bonds are treated as fundamental underpinnings of the structure and function of such stalwart biomolecules [21,22,23] as proteins, nucleic acids, and carbohydrates. Despite their wide occurrence, intramolecular H-bonds have been studied far less than their intermolecular cousins. One reason for this less robust literature is a set of complications that cloud the interpretation of the data. In the avenue of quantum calculations, for example, a bulwark of the characterization of any interaction such as an H-bond is the energy required to break it. However, the definition of the H-bond energy for an intramolecular H-bond is fraught with complications, and has engendered a number of different approaches, one could almost say ‘tricks’, to seek an accurate and reliable means of its estimation. It is to this subject of intramolecular H-bonds that this issue is devoted. There are a number of review articles that summarize the current state of the art in various disciplines. Oksanen et al. explain how neutron crystallography can be applied to such bonds in the context of large macromolecules [24]. Hansen and Spanget-Larsen review progress in the application of NMR and IR in the context of particularly strong H-bonds [25]. The manner in which quantum calculations can mesh with experimental approaches is summarized by Siskos et al. [26]. The involvement of one particular element, F, is described in some detail by Mishra and Suryaprakash [27], and Sobczyk et al. review a select group of intramolecular H-bonds [28]. Aside from these review articles, the issue contains a wide variety of reports of new studies. Quantum calculations are an important means to analyze interactions such as these and the influence of such calculations represents a common theme in much of the work described here. Quiquempoix et al. look at levoglucosan and its derivatives [29], while variously substituted aminobenzamides come under the scrutiny of Mphahlele et al. [30]. Mammino considers the relevance of these interactions to an antioxidant [31]; the possibility of multiple intramolecular H-bonds, and their relevance to regioisomers, is discussed by Martínez-Cifuentes et al. [32]. Rusinska-Roszak [33] focuses on the relation between these bonds and aromaticity, while lactams are the subject of the contribution by Mejia et al. [34]. Bilonda and Mammino apply their calculations to quinine [35], and the naphthalene series is examined by Sanchez-Sanz et al. who compare H-bonds to their chalcogen analogues [36]. Scheiner explains how quantum calculations of NMR data can provide unambiguous evidence of H-bonds, as well as their strength [37]. In addition to quantum calculations, methods of dynamics can also be useful, as explained by Huang et al. [38]. It is hoped that this select list of reports and review articles will provide the reader with some perspective on the field of intramolecular H-bonds. Some of this work may perhaps inspire others to pursue threads that remain open in this area, with many lingering questions that beg for answers.
  21 in total

1.  On the intramolecular origin of the blue shift of A-H stretching frequencies: triatomic hydrides HAX.

Authors:  Alfred Karpfen; Eugene S Kryachko
Journal:  J Phys Chem A       Date:  2009-04-30       Impact factor: 2.781

2.  Blue shifts vs red shifts in sigma-hole bonding.

Authors:  Jane S Murray; Monica C Concha; Pat Lane; Pavel Hobza; Peter Politzer
Journal:  J Mol Model       Date:  2008-04-26       Impact factor: 1.810

Review 3.  Hydrogen bonding in globular proteins.

Authors:  E N Baker; R E Hubbard
Journal:  Prog Biophys Mol Biol       Date:  1984       Impact factor: 3.667

4.  Intramolecular Hydrogen Bonds in Conformers of Quinine and Quinidine: An HF, MP2 and DFT Study.

Authors:  Mireille K Bilonda; Liliana Mammino
Journal:  Molecules       Date:  2017-02-07       Impact factor: 4.411

5.  Intramolecular Hydrogen Bonding and Conformational Preferences of Arzanol-An Antioxidant Acylphloroglucinol.

Authors:  Liliana Mammino
Journal:  Molecules       Date:  2017-08-03       Impact factor: 4.411

6.  Energy of Intramolecular Hydrogen Bonding in ortho-Hydroxybenzaldehydes, Phenones and Quinones. Transfer of Aromaticity from ipso-Benzene Ring to the Enol System(s).

Authors:  Danuta Rusinska-Roszak
Journal:  Molecules       Date:  2017-03-18       Impact factor: 4.411

Review 7.  Neutron Crystallography for the Study of Hydrogen Bonds in Macromolecules.

Authors:  Esko Oksanen; Julian C-H Chen; Suzanne Zoë Fisher
Journal:  Molecules       Date:  2017-04-07       Impact factor: 4.411

Review 8.  NMR and IR Investigations of Strong Intramolecular Hydrogen Bonds.

Authors:  Poul Erik Hansen; Jens Spanget-Larsen
Journal:  Molecules       Date:  2017-03-29       Impact factor: 4.411

9.  Looking Inside the Intramolecular C-H∙∙∙O Hydrogen Bond in Lactams Derived from α-Methylbenzylamine.

Authors:  Sandra Mejía; Julio M Hernández-Pérez; Jacinto Sandoval-Lira; Fernando Sartillo-Piscil
Journal:  Molecules       Date:  2017-02-28       Impact factor: 4.411

10.  A Study about Regioisomeric Hydroquinones with Multiple Intramolecular Hydrogen Bonding.

Authors:  Maximiliano Martínez-Cifuentes; Wilson Cardona; Claudio Saitz; Boris Weiss-López; Ramiro Araya-Maturana
Journal:  Molecules       Date:  2017-04-07       Impact factor: 4.411

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  3 in total

1.  Focal Point Evaluation of Energies for Tautomers and Isomers for 3-Hydroxy-2-Butenamide: Evaluation of Competing Internal Hydrogen Bonds of Types -OH…O=, -OH…N, -NH…O=, and CH…X (X=O and N).

Authors:  Zikri Altun; Erdi Ata Bleda; Carl Trindle
Journal:  Molecules       Date:  2021-04-30       Impact factor: 4.411

2.  Competition between Intra and Intermolecular Triel Bonds. Complexes between Naphthalene Derivatives and Neutral or Anionic Lewis Bases.

Authors:  Wiktor Zierkiewicz; Mariusz Michalczyk; Steve Scheiner
Journal:  Molecules       Date:  2020-02-01       Impact factor: 4.411

3.  Intramolecular Hydrogen Bonds in Normal and Sterically Compressed o-Hydroxy Aromatic Aldehydes. Isotope Effects on Chemical Shifts and Hydrogen Bond Strength.

Authors:  Poul Erik Hansen; Fadhil S Kamounah; Bahjat A Saeed; Mark J MacLachlan; Jens Spanget-Larsen
Journal:  Molecules       Date:  2019-12-11       Impact factor: 4.411

  3 in total

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