Literature DB >> 30919066

σ-Holes and Si···N intramolecular interactions.

Jane S Murray1, Peter Politzer2.   

Abstract

We report a computational study of two series of molecules, one having the Si-O-N linkage and the other with the Si-(CH2)n-N linkage, where n = 1-4. The silicons have various substituents-combinations of H, CH3, F, Cl and CF3. Many of these compounds have been prepared and characterized experimentally. The Si···N distances were found to be relatively short, which may denote a noncovalent interaction or may simply be dictated by the molecular structures. This and the nature of the interaction (if any) were the subjects of our study. We addressed these issues computationally, determining optimized geometries, energies and electrostatic potentials at the density functional M06-2X/6-31 + G(d,p) level. We conclude that there is an attractive Coulombic Si···N interaction in each case, although it is sometimes quite weak. It involves the lone pair of the nitrogen and the positive σ-hole potential produced on the silicon by the bonding from the substituent that is anti to the nitrogen. This accounts for the key features of these molecules, such as the dependence of the Si···N distances upon the electron-withdrawing power of the anti substituent and the effects of gauche chlorines in weakening the interactions. When the Si···N interactions are disrupted by rotation of the N(CH3)2 group or by conversion of the molecules to open-chain conformers, the Si···N distances lengthen and are essentially the same regardless of the substituent in the anti position. These observations confirm the presence of Si···N interactions in the original molecules.

Entities:  

Keywords:  Electrostatic potentials; Intramolecular noncovalent interactions; Si···N interactions; Tetrel bonds; σ-Holes

Year:  2019        PMID: 30919066     DOI: 10.1007/s00894-019-3962-2

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  3 in total

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Journal:  Molecules       Date:  2022-03-26       Impact factor: 4.411

2.  Competition between Intra and Intermolecular Triel Bonds. Complexes between Naphthalene Derivatives and Neutral or Anionic Lewis Bases.

Authors:  Wiktor Zierkiewicz; Mariusz Michalczyk; Steve Scheiner
Journal:  Molecules       Date:  2020-02-01       Impact factor: 4.411

3.  Theoretical Studies of IR and NMR Spectral Changes Induced by Sigma-Hole Hydrogen, Halogen, Chalcogen, Pnicogen, and Tetrel Bonds in a Model Protein Environment.

Authors:  Mariusz Michalczyk; Wiktor Zierkiewicz; Rafał Wysokiński; Steve Scheiner
Journal:  Molecules       Date:  2019-09-12       Impact factor: 4.411

  3 in total

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