| Literature DB >> 31817238 |
Farzana Parveen1, Daniel Bender2, Shi-Hui Law1, Vineet Kumar Mishra1, Chih-Chieh Chen3, Liang-Yin Ke1,4,5.
Abstract
Entities:
Keywords: Alzheimer’s disease; ceramide accumulation; inflammatory bowel disease; insulin resistance; metabolic syndrome; neutral ceramidase; type 2 diabetes
Year: 2019 PMID: 31817238 PMCID: PMC6952831 DOI: 10.3390/cells8121573
Source DB: PubMed Journal: Cells ISSN: 2073-4409 Impact factor: 6.600
Figure 1Crystal structure and the catalytic site of ceramidases. (A) Acid ceramidase (PDB ID: 6MHM); (B) neutral ceramidase (PDB ID: 4WGK); (C) alkaline ceramidase (PDB ID: 6G7O); and (D) the hydrolysis reaction of ceramidases. Docked ceramides are shown as yellow spheres and sticks. The structural representations were generated by PyMOL.
Expression and subcellular localization of human ceramidases.
| Ceramidase | Encoded by Gene | Optimal pH | Expression | Subcellular Localization | Associated Diseases |
|---|---|---|---|---|---|
| Acid ceramidase | ∼4.0–4.5 | Heart, kidneys, lungs, placenta, etc. [ | Lysosomes [ | Farber’s disease, Alzheimer’s disease, cancer, diabetes, and spinal muscular atrophy [ | |
| Neutral ceramidase | ∼7.0–7.4 | Small intestine [ | Mitochondria (HEK293T overexpressing cells) [ | Alzheimer’s disease [ | |
| Plasma membrane (HEK293T overexpressing cells) [ | |||||
| Mitochondria and Golgi (HCT116 overexpressing cells) [ | |||||
| Alkaline ceramidase | ∼9.0 | Skin | ER | Progressive leukodystrophy [ | |
| Placental tissue | Golgi complex [ | ||||
| Ubiquitous, | ER and Golgi complex [ |
ASAH1, N-acylsphingosine amidohydrolase 1; ASAH2, N-acylsphingosine amidohydrolase 2; ACER1, alkaline ceramidase 1; ACER2, alkaline ceramidase 2; ACER3, alkaline ceramidase 3; ER, endoplasmic reticulum; Golgi, Golgi apparatus.
KM values of ceramidases.
| Name | pH | Temp. | Substrate | Note | References | ||
|---|---|---|---|---|---|---|---|
| Acid ceramidase | 4.5 | 37 | 389 | 462.97 | pH 4.5, 37 °C, recombinant ceramidase expressed in CHO cells, 14C-labeled substrate | [ | |
| 413.2 | 33.33 | pH 4.5, 37 °C, recombinant ceramidase expressed in CHO cells, BODIPY-conjugated substrate | |||||
| Neutral ceramidase | 7.5 | 37 | 60.1 | 0.68 | pH 7.5, 37 °C, recombinant ceramidase | [ | |
| Alkaline ceramidase | 9.0 | 37 | 98.5 | 0.0237 | C16:0-ceramide | pH 9.0, 37 °C | [ |
CHO: Chinese hamster ovary; BODIPY, an abbreviation for boron-dipyrromethene fluorescent dye; ACER2: alkaline ceramidase 2; *: no K value information for ACER1 or ACER3.
Figure 2Tissue expression of ASAH2 and transcriptional factors stimulating expression. (A) ASAH2 is expressed in the brain, heart, liver, kidneys, gut, and small intestine of mice (upper panel). In contrast, it is only expressed in the gut and small intestine of humans (lower panel). (B) The transcriptional factor hepatocyte nuclear factor 4α (HNF-4α) binds to −207 to −221 of ASAH2 in mice (NM_018830; Mus musculus). In contrast, together with c-Jun, the transcriptional factor AP-1 binds to −200 and regulates human ASAH2 transcription (NM_019893; Homo sapiens). Other transcriptional factors such as NF-Y, AP-2, Oct-1, and GATA have been reported as regulating the expression of human ASAH2. Note that in a yeast-expressing system, 2% (w/v) galactose also enhances expression.
Figure 3Alignment of ASAH2 amino acid sequences from different species using the Clustal W method. NP_063946 ASAH2 isoform 1 from Homo sapiens; NP_001137446 ASAH2 isoform 2 from Homo sapiens, with alternative splicing skipping amino acids 410–444; XP_020928352 ASAH2 from Sus scrofa (pigs); XP_005636694 ASAH2 from Canis lupus familiaris (dogs); XP_003507579 ASAH2 from Cricetulus grisesu (hamsters); NP_061300 ASAH2 from Mus musculus (mice); NP_446098 ASAH2 from Rattus norvegicus (rats); NP_1123830 from Xenopus tropicalis; NP_1007764 from Danio rerio. Amino acids are colored according to different chemical properties. Identical amino acid residues are shown with a blue background. Note that some issues are listed below: The alternative splicing of human ASAH2 leads to a truncation of isoform 2, which lacks 35 amino acids from position 410 to 444 (blue line). The detailed mechanisms are not clear. Position 34 to 103 is the most variable region of ASAH2. It may lead to enormous differences between the subcellular location, function, and expression levels in humans and other animals. The N-terminal type 2 membrane signal-anchor peptide FLIFLLVMMXXX (a.a.12 to 33) and the amidase motif NLGDVSPNXLGPXC (a.a.353 to 366) are relatively conserved, and their functions have been well studied. Red arrows indicate multiple putative start codons in the N-terminal of ASAH2. These might lead to various ASAH2 isoforms that differ in length and in terms of their intracellular localization.
Figure 4Altered ceramide/sphingosine-1 phosphate balance during metabolic disorders and shifting cell fate toward apoptosis and proliferation, respectively. When the ceramide level is elevated: cells undergo apoptosis. A high level of ceramide is observed in patients with insulin resistance, Alzheimer’s disease, or nonalcoholic fatty liver disease (NAFLD). While, when sphingosine-1 phosphate (S1P) is elevated: cells undergo a proliferative mode. A high level of S1P is observed in patients with inflammatory bowel disease, traumatic brain injury, and cancer.
Ceramidase and metabolic disorders.
| Disease | ASAH2 Expression | Ceramide Level | S1P Level | Tissue/Cells | References |
|---|---|---|---|---|---|
| Insulin resistance | Decreased | Increased | Not known | INS-1 pancreatic β cells, H4IIEC3 hepatocytes | [ |
| Cardiovascular diseases | Activity decreased | Not known | Not Known | Human umbilical vein endothelial cells (HUVECs) | [ |
| Alzheimer’s disease | Not known | Ceramide accumulation | Decreased | Human brain | [ |
| Traumatic brain injury | Increased activity | Decreased | No difference | Mouse brain, mitochondria dysfunction | [ |
| Cancer | Increased expression | Not known | Not known | CaCo2BBe, HCT116 colon cancer cells | [ |
| Inflammatory bowel diseases | Decreased activity | Increased in colon epithelium | Increased upon ASAH2 knockout | Gut from DSS-treated C57BL/6 mice | [ |
INS-1: insulin-secreting beta cell; DSS: dextran sulfate sodium.