Literature DB >> 28329765

Structural insights into adiponectin receptors suggest ceramidase activity.

Ieva Vasiliauskaité-Brooks1, Remy Sounier1, Pascal Rochaix1, Gaëtan Bellot1, Mathieu Fortier1, François Hoh2, Luigi De Colibus3, Chérine Bechara4, Essa M Saied5,6, Christoph Arenz5, Cédric Leyrat1, Sébastien Granier1.   

Abstract

Adiponectin receptors (ADIPORs) are integral membrane proteins that control glucose and lipid metabolism by mediating, at least in part, a cellular ceramidase activity that catalyses the hydrolysis of ceramide to produce sphingosine and a free fatty acid (FFA). The crystal structures of the two receptor subtypes, ADIPOR1 and ADIPOR2, show a similar overall seven-transmembrane-domain architecture with large unoccupied cavities and a zinc binding site within the seven transmembrane domain. However, the molecular mechanisms by which ADIPORs function are not known. Here we describe the crystal structure of ADIPOR2 bound to a FFA molecule and show that ADIPOR2 possesses intrinsic basal ceramidase activity that is enhanced by adiponectin. We also identify a ceramide binding pose and propose a possible mechanism for the hydrolytic activity of ADIPOR2 using computational approaches. In molecular dynamics simulations, the side chains of residues coordinating the zinc rearrange quickly to promote the nucleophilic attack of a zinc-bound hydroxide ion onto the ceramide amide carbonyl. Furthermore, we present a revised ADIPOR1 crystal structure exhibiting a seven-transmembrane-domain architecture that is clearly distinct from that of ADIPOR2. In this structure, no FFA is observed and the ceramide binding pocket and putative zinc catalytic site are exposed to the inner membrane leaflet. ADIPOR1 also possesses intrinsic ceramidase activity, so we suspect that the two distinct structures may represent key steps in the enzymatic activity of ADIPORs. The ceramidase activity is low, however, and further studies will be required to characterize fully the enzymatic parameters and substrate specificity of ADIPORs. These insights into ADIPOR function will enable the structure-based design of potent modulators of these clinically relevant enzymes.

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Year:  2017        PMID: 28329765      PMCID: PMC5595237          DOI: 10.1038/nature21714

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  45 in total

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Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

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Journal:  J Mol Evol       Date:  2005-07-21       Impact factor: 2.395

3.  Paradoxical decrease of an adipose-specific protein, adiponectin, in obesity.

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Journal:  Biochem Biophys Res Commun       Date:  1999-04-02       Impact factor: 3.575

4.  CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

Authors:  Emilia L Wu; Xi Cheng; Sunhwan Jo; Huan Rui; Kevin C Song; Eder M Dávila-Contreras; Yifei Qi; Jumin Lee; Viviana Monje-Galvan; Richard M Venable; Jeffery B Klauda; Wonpil Im
Journal:  J Comput Chem       Date:  2014-08-07       Impact factor: 3.376

5.  CHARMM all-atom additive force field for sphingomyelin: elucidation of hydrogen bonding and of positive curvature.

Authors:  Richard M Venable; Alexander J Sodt; Brent Rogaski; Huan Rui; Elizabeth Hatcher; Alexander D MacKerell; Richard W Pastor; Jeffery B Klauda
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

6.  Production of recombinant antibodies in Drosophila melanogaster S2 cells.

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Journal:  Methods Mol Biol       Date:  2012

7.  Features and development of Coot.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 8.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

9.  CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field.

Authors:  Jumin Lee; Xi Cheng; Jason M Swails; Min Sun Yeom; Peter K Eastman; Justin A Lemkul; Shuai Wei; Joshua Buckner; Jong Cheol Jeong; Yifei Qi; Sunhwan Jo; Vijay S Pande; David A Case; Charles L Brooks; Alexander D MacKerell; Jeffery B Klauda; Wonpil Im
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10.  Phaser crystallographic software.

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  69 in total

Review 1.  Beyond adiponectin and leptin: adipose tissue-derived mediators of inter-organ communication.

Authors:  Jan-Bernd Funcke; Philipp E Scherer
Journal:  J Lipid Res       Date:  2019-06-17       Impact factor: 5.922

2.  Structural biology: Receptors grease the metabolic wheels.

Authors:  William L Holland; Philipp E Scherer
Journal:  Nature       Date:  2017-03-22       Impact factor: 49.962

Review 3.  The many secret lives of adipocytes: implications for diabetes.

Authors:  Philipp E Scherer
Journal:  Diabetologia       Date:  2018-11-21       Impact factor: 10.122

4.  Adiponectin and related C1q/TNF-related proteins bind selectively to anionic phospholipids and sphingolipids.

Authors:  Jessica J Ye; Xin Bian; Jaechul Lim; Ruslan Medzhitov
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-06       Impact factor: 11.205

5.  Adiponectin and its Hydrolase-Activated Receptors.

Authors:  Ankit X Sharma; William L Holland
Journal:  J Nat Sci       Date:  2017-06

6.  Variations in ADIPOR1 But Not ADIPOR2 are Associated With Hypertriglyceridemia and Diabetes in an Admixed Latin American Population.

Authors:  Gustavo Mora-García; María S Ruiz-Díaz; Fabian Espitia-Almeida; Doris Gómez-Camargo
Journal:  Rev Diabet Stud       Date:  2017-10-10

Review 7.  Sphingolipids and their metabolism in physiology and disease.

Authors:  Yusuf A Hannun; Lina M Obeid
Journal:  Nat Rev Mol Cell Biol       Date:  2017-11-22       Impact factor: 94.444

Review 8.  Immunologic and endocrine functions of adipose tissue: implications for kidney disease.

Authors:  Qingzhang Zhu; Philipp E Scherer
Journal:  Nat Rev Nephrol       Date:  2017-12-04       Impact factor: 28.314

Review 9.  The role of ceramides in metabolic disorders: when size and localization matters.

Authors:  Sarah M Turpin-Nolan; Jens C Brüning
Journal:  Nat Rev Endocrinol       Date:  2020-02-14       Impact factor: 43.330

10.  Inhibition of pannexin-1 channel activity by adiponectin in podocytes: Role of acid ceramidase activation.

Authors:  Guangbi Li; Qinghua Zhang; Jinni Hong; Joseph K Ritter; Pin-Lan Li
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2018-08-01       Impact factor: 4.698

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