Literature DB >> 26907531

Genetics and Pathogenesis of Inflammatory Bowel Disease.

Ta-Chiang Liu1, Thaddeus S Stappenbeck1.   

Abstract

We are currently in an exciting time when our understanding of genetic underpinnings of inflammatory bowel disease (IBD) has undergone a revolution, based in large part on novel genotyping and sequencing technologies. With >160 susceptible loci identified for IBD, the goal is now to understand at a fundamental level the function of these susceptibility alleles. Determining the clinical relevance of how these susceptible genes shape the development of IBD is also a high priority. The main challenge is to understand how the environment and microbiome play a role in triggering disease in genetically susceptible individuals, as the interactions may be complex. To advance the field, novel in vitro and mouse models that are designed to interrogate complex genetics and functionally test hypotheses are needed. Ultimately, the goal of genetics studies will be to translate genetics to patients with IBD and improve their care.

Entities:  

Keywords:  Crohn's disease; causative variants; genome-wide association study; ulcerative colitis

Mesh:

Year:  2016        PMID: 26907531      PMCID: PMC4961083          DOI: 10.1146/annurev-pathol-012615-044152

Source DB:  PubMed          Journal:  Annu Rev Pathol        ISSN: 1553-4006            Impact factor:   23.472


  120 in total

1.  Annexin A1-containing extracellular vesicles and polymeric nanoparticles promote epithelial wound repair.

Authors:  Giovanna Leoni; Philipp-Alexander Neumann; Nazila Kamaly; Miguel Quiros; Hikaru Nishio; Hefin R Jones; Ronen Sumagin; Roland S Hilgarth; Ashfaqul Alam; Gabrielle Fredman; Ioannis Argyris; Emile Rijcken; Dennis Kusters; Chris Reutelingsperger; Mauro Perretti; Charles A Parkos; Omid C Farokhzad; Andrew S Neish; Asma Nusrat
Journal:  J Clin Invest       Date:  2015-02-09       Impact factor: 14.808

Review 2.  Genetics and pathogenesis of inflammatory bowel disease.

Authors:  Bernard Khor; Agnès Gardet; Ramnik J Xavier
Journal:  Nature       Date:  2011-06-15       Impact factor: 49.962

3.  A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.

Authors:  Keiko Yamazaki; Junji Umeno; Atsushi Takahashi; Atsushi Hirano; Todd Andrew Johnson; Natsuhiko Kumasaka; Takashi Morizono; Naoya Hosono; Takaaki Kawaguchi; Masakazu Takazoe; Tetsuhiro Yamada; Yasuo Suzuki; Hiroki Tanaka; Satoshi Motoya; Masayo Hosokawa; Yoshiaki Arimura; Yasuhisa Shinomura; Toshiyuki Matsui; Takayuki Matsumoto; Mitsuo Iida; Tatsuhiko Tsunoda; Yusuke Nakamura; Naoyuki Kamatani; Michiaki Kubo
Journal:  Gastroenterology       Date:  2012-12-22       Impact factor: 22.682

4.  Super-enhancers in the control of cell identity and disease.

Authors:  Denes Hnisz; Brian J Abraham; Tong Ihn Lee; Ashley Lau; Violaine Saint-André; Alla A Sigova; Heather A Hoke; Richard A Young
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

5.  Opposing effects of smoking in ulcerative colitis and Crohn's disease may be explained by differential effects on dendritic cells.

Authors:  Aito Ueno; Humberto Jijon; Suzanne Traves; Ronald Chan; Kim Ford; Paul L Beck; Marietta Iacucci; Miriam Fort Gasia; Herman W Barkema; Remo Panaccione; Gilaad G Kaplan; David Proud; Subrata Ghosh
Journal:  Inflamm Bowel Dis       Date:  2014-05       Impact factor: 5.325

6.  A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes.

Authors:  Ben P Willing; Johan Dicksved; Jonas Halfvarson; Anders F Andersson; Marianna Lucio; Zongli Zheng; Gunnar Järnerot; Curt Tysk; Janet K Jansson; Lars Engstrand
Journal:  Gastroenterology       Date:  2010-10-08       Impact factor: 22.682

7.  Human genetics shape the gut microbiome.

Authors:  Julia K Goodrich; Jillian L Waters; Angela C Poole; Jessica L Sutter; Omry Koren; Ran Blekhman; Michelle Beaumont; William Van Treuren; Rob Knight; Jordana T Bell; Timothy D Spector; Andrew G Clark; Ruth E Ley
Journal:  Cell       Date:  2014-11-06       Impact factor: 41.582

8.  XIAP variants in male Crohn's disease.

Authors:  Yvonne Zeissig; Britt-Sabina Petersen; Snezana Milutinovic; Esther Bosse; Gabriele Mayr; Kenneth Peuker; Jelka Hartwig; Andreas Keller; Martina Kohl; Martin W Laass; Susanne Billmann-Born; Heide Brandau; Alfred C Feller; Christoph Röcken; Martin Schrappe; Philip Rosenstiel; John C Reed; Stefan Schreiber; Andre Franke; Sebastian Zeissig
Journal:  Gut       Date:  2014-02-26       Impact factor: 23.059

9.  Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome.

Authors:  Benoit Chassaing; Omry Koren; Julia K Goodrich; Angela C Poole; Shanthi Srinivasan; Ruth E Ley; Andrew T Gewirtz
Journal:  Nature       Date:  2015-02-25       Impact factor: 49.962

10.  Paneth cells as a site of origin for intestinal inflammation.

Authors:  Timon E Adolph; Michal F Tomczak; Lukas Niederreiter; Hyun-Jeong Ko; Janne Böck; Eduardo Martinez-Naves; Jonathan N Glickman; Markus Tschurtschenthaler; John Hartwig; Shuhei Hosomi; Magdalena B Flak; Jennifer L Cusick; Kenji Kohno; Takao Iwawaki; Susanne Billmann-Born; Tim Raine; Richa Bharti; Ralph Lucius; Mi-Na Kweon; Stefan J Marciniak; Augustine Choi; Susan J Hagen; Stefan Schreiber; Philip Rosenstiel; Arthur Kaser; Richard S Blumberg
Journal:  Nature       Date:  2013-10-02       Impact factor: 49.962

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  73 in total

Review 1.  Indole compounds may be promising medicines for ulcerative colitis.

Authors:  Shinya Sugimoto; Makoto Naganuma; Takanori Kanai
Journal:  J Gastroenterol       Date:  2016-05-09       Impact factor: 7.527

2.  LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients.

Authors:  Ta-Chiang Liu; Takeo Naito; Zhenqiu Liu; Kelli L VanDussen; Talin Haritunians; Dalin Li; Katsuya Endo; Yosuke Kawai; Masao Nagasaki; Yoshitaka Kinouchi; Dermot Pb McGovern; Tooru Shimosegawa; Yoichi Kakuta; Thaddeus S Stappenbeck
Journal:  JCI Insight       Date:  2017-03-23

Review 3.  Host-Microbiota Interactions Shape Local and Systemic Inflammatory Diseases.

Authors:  John B Grigg; Gregory F Sonnenberg
Journal:  J Immunol       Date:  2017-01-15       Impact factor: 5.422

4.  Interaction between smoking and ATG16L1T300A triggers Paneth cell defects in Crohn's disease.

Authors:  Ta-Chiang Liu; Justin T Kern; Kelli L VanDussen; Shanshan Xiong; Gerard E Kaiko; Craig B Wilen; Michael W Rajala; Roberta Caruso; Michael J Holtzman; Feng Gao; Dermot Pb McGovern; Gabriel Nunez; Richard D Head; Thaddeus S Stappenbeck
Journal:  J Clin Invest       Date:  2018-10-15       Impact factor: 14.808

5.  Peripartum Antibiotics Promote Gut Dysbiosis, Loss of Immune Tolerance, and Inflammatory Bowel Disease in Genetically Prone Offspring.

Authors:  Jun Miyoshi; Alexandria M Bobe; Sawako Miyoshi; Yong Huang; Nathaniel Hubert; Tom O Delmont; A Murat Eren; Vanessa Leone; Eugene B Chang
Journal:  Cell Rep       Date:  2017-07-11       Impact factor: 9.423

6.  Galectin-9 Is a Novel Regulator of Epithelial Restitution.

Authors:  Brian S Robinson; Bejan Saeedi; Connie M Arthur; Josh Owens; Crystal Naudin; Nourine Ahmed; Liping Luo; Rheinallt Jones; Andrew Neish; Sean R Stowell
Journal:  Am J Pathol       Date:  2020-05-04       Impact factor: 4.307

7.  Loss of acid ceramidase in myeloid cells suppresses intestinal neutrophil recruitment.

Authors:  Mel Pilar Espaillat; Ashley J Snider; Zhijuan Qiu; Breana Channer; Nicolas Coant; Edward H Schuchman; Richard R Kew; Brian S Sheridan; Yusuf A Hannun; Lina M Obeid
Journal:  FASEB J       Date:  2017-12-19       Impact factor: 5.191

8.  Predicting Risk of Postoperative Disease Recurrence in Crohn's Disease: Patients With Indolent Crohn's Disease Have Distinct Whole Transcriptome Profiles at the Time of First Surgery.

Authors:  Kelly C Cushing; Richard Mclean; Keely G McDonald; Jenny K Gustafsson; Kathryn A Knoop; Devesha H Kulkarni; R Balfour Sartor; Rodney D Newberry
Journal:  Inflamm Bowel Dis       Date:  2019-01-01       Impact factor: 5.325

9.  Quercetin Attenuates Adhesion Molecule Expression in Intestinal Microvascular Endothelial Cells by Modulating Multiple Pathways.

Authors:  Yifei Bian; Ping Liu; Jia Zhong; Yusheng Hu; Shen Zhuang; Kai Fan; Zhongjie Liu
Journal:  Dig Dis Sci       Date:  2018-08-04       Impact factor: 3.199

10.  Dandelion root extract protects NCM460 colonic cells and relieves experimental mouse colitis.

Authors:  Aiguo Ding; Xianhui Wen
Journal:  J Nat Med       Date:  2018-05-08       Impact factor: 2.343

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