Literature DB >> 31668224

Phase-separated condensates of metabolic complexes in living cells: Purinosome and glucosome.

Songon An1, Miji Jeon2, Erin L Kennedy2, Minjoung Kyoung3.   

Abstract

Sequential metabolic enzymes have long been hypothesized to form multienzyme metabolic complexes to regulate metabolic flux in cells. Although in vitro biochemistry has not been fruitful to support the hypothesis, advanced biophysical technologies have successfully resurrected the hypothesis with compelling experimental evidence. As biochemistry has always evolved along with technological advancement over the century (e.g., recombinant protein expression, site-directed mutagenesis, advanced spectroscopy and structural biology techniques, etc.), there has been growing interest in advanced imaging-based biophysical methods to explore enzymes inside living cells. In this work, we describe how we visualize two phase-separated biomolecular condensates of multienzyme metabolic complexes that are associated with de novo purine biosynthesis and glucose metabolism in living human cells and how imaging-based data are quantitatively analyzed to advance our knowledge of enzymes and their assemblies in living cells. Therefore, we envision that the framework we describe here would be the starting point to investigate other metabolic enzymes and their assemblies in various cell types with an unprecedented potential to comprehend enzymes and their network in native habitats.
© 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Fluorescence microscopy; Glucosome; High-content analysis; Live-cell imaging; Metabolic complex; Metabolon; Phase-separated biomolecular condensate; Purinosome; Single cell analysis

Mesh:

Substances:

Year:  2019        PMID: 31668224      PMCID: PMC6827869          DOI: 10.1016/bs.mie.2019.06.013

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  19 in total

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Review 4.  Imaging proteins inside cells with fluorescent tags.

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Journal:  Trends Biotechnol       Date:  2011-09-15       Impact factor: 19.536

5.  Direct observation of individual endogenous protein complexes in situ by proximity ligation.

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Journal:  Nat Methods       Date:  2006-10-29       Impact factor: 28.547

6.  Sequestration-Mediated Downregulation of de Novo Purine Biosynthesis by AMPK.

Authors:  Danielle L Schmitt; Yun-Ju Cheng; Junyong Park; Songon An
Journal:  ACS Chem Biol       Date:  2016-05-11       Impact factor: 5.100

7.  A subcellular map of the human proteome.

Authors:  Peter J Thul; Lovisa Åkesson; Mikaela Wiking; Diana Mahdessian; Aikaterini Geladaki; Hammou Ait Blal; Tove Alm; Anna Asplund; Lars Björk; Lisa M Breckels; Anna Bäckström; Frida Danielsson; Linn Fagerberg; Jenny Fall; Laurent Gatto; Christian Gnann; Sophia Hober; Martin Hjelmare; Fredric Johansson; Sunjae Lee; Cecilia Lindskog; Jan Mulder; Claire M Mulvey; Peter Nilsson; Per Oksvold; Johan Rockberg; Rutger Schutten; Jochen M Schwenk; Åsa Sivertsson; Evelina Sjöstedt; Marie Skogs; Charlotte Stadler; Devin P Sullivan; Hanna Tegel; Casper Winsnes; Cheng Zhang; Martin Zwahlen; Adil Mardinoglu; Fredrik Pontén; Kalle von Feilitzen; Kathryn S Lilley; Mathias Uhlén; Emma Lundberg
Journal:  Science       Date:  2017-05-11       Impact factor: 47.728

8.  Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.

Authors:  Bi-Chang Chen; Wesley R Legant; Kai Wang; Lin Shao; Daniel E Milkie; Michael W Davidson; Chris Janetopoulos; Xufeng S Wu; John A Hammer; Zhe Liu; Brian P English; Yuko Mimori-Kiyosue; Daniel P Romero; Alex T Ritter; Jennifer Lippincott-Schwartz; Lillian Fritz-Laylin; R Dyche Mullins; Diana M Mitchell; Joshua N Bembenek; Anne-Cecile Reymann; Ralph Böhme; Stephan W Grill; Jennifer T Wang; Geraldine Seydoux; U Serdar Tulu; Daniel P Kiehart; Eric Betzig
Journal:  Science       Date:  2014-10-23       Impact factor: 47.728

9.  Segregation of molecules at cell division reveals native protein localization.

Authors:  Dirk Landgraf; Burak Okumus; Peter Chien; Tania A Baker; Johan Paulsson
Journal:  Nat Methods       Date:  2012-04-08       Impact factor: 28.547

10.  Improved efficiency of in situ protein analysis by proximity ligation using UnFold probes.

Authors:  Axel Klaesson; Karin Grannas; Tonge Ebai; Johan Heldin; Björn Koos; Mattias Leino; Doroteya Raykova; Johan Oelrich; Linda Arngården; Ola Söderberg; Ulf Landegren
Journal:  Sci Rep       Date:  2018-03-29       Impact factor: 4.379

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  4 in total

1.  Multi-dimensional Fluorescence Live-Cell Imaging for Glucosome Dynamics in Living Human Cells.

Authors:  Songon An; Prakash Parajuli; Erin L Kennedy; Minjoung Kyoung
Journal:  Methods Mol Biol       Date:  2022

Review 2.  Liquid-liquid phase separation: a principal organizer of the cell's biochemical activity architecture.

Authors:  Jason Z Zhang; Sohum Mehta; Jin Zhang
Journal:  Trends Pharmacol Sci       Date:  2021-08-06       Impact factor: 14.819

Review 3.  Enzymatic Reactions inside Biological Condensates.

Authors:  Yi Zhang; Geeta J Narlikar; Tatiana G Kutateladze
Journal:  J Mol Biol       Date:  2020-08-15       Impact factor: 6.151

4.  Purine biosynthetic enzymes assemble into liquid-like condensates dependent on the activity of chaperone protein HSP90.

Authors:  Anthony M Pedley; Jack P Boylan; Chung Yu Chan; Erin L Kennedy; Minjoung Kyoung; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2022-03-18       Impact factor: 5.486

  4 in total

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