Literature DB >> 21924508

Imaging proteins inside cells with fluorescent tags.

Georgeta Crivat1, Justin W Taraska.   

Abstract

Watching biological molecules provides clues to their function and regulation. Some of the most powerful methods of labeling proteins for imaging use genetically encoded fluorescent fusion tags. There are four standard genetic methods of covalently tagging a protein with a fluorescent probe for cellular imaging. These use (i) autofluorescent proteins, (ii) self-labeling enzymes, (iii) enzymes that catalyze the attachment of a probe to a target sequence, and (iv) biarsenical dyes that target tetracysteine motifs. Each of these techniques has advantages and disadvantages. In this review, we cover new developments in these methods and discuss practical considerations for their use in imaging proteins inside living cells. Published by Elsevier Ltd.

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Year:  2011        PMID: 21924508      PMCID: PMC3246539          DOI: 10.1016/j.tibtech.2011.08.002

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  86 in total

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Authors:  Guido Gaietta; Thomas J Deerinck; Stephen R Adams; James Bouwer; Oded Tour; Dale W Laird; Gina E Sosinsky; Roger Y Tsien; Mark H Ellisman
Journal:  Science       Date:  2002-04-19       Impact factor: 47.728

2.  Green fluorescent protein tagging Drosophila proteins at their native genomic loci with small P elements.

Authors:  Peter J Clyne; Jennie S Brotman; Sean T Sweeney; Graeme Davis
Journal:  Genetics       Date:  2003-11       Impact factor: 4.562

Review 3.  Building and breeding molecules to spy on cells and tumors.

Authors:  Roger Y Tsien
Journal:  FEBS Lett       Date:  2005-02-07       Impact factor: 4.124

4.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

5.  Engineered fluorescent proteins: innovations and applications.

Authors:  Michael W Davidson; Robert E Campbell
Journal:  Nat Methods       Date:  2009-10       Impact factor: 28.547

6.  An improved cerulean fluorescent protein with enhanced brightness and reduced reversible photoswitching.

Authors:  Michele L Markwardt; Gert-Jan Kremers; Catherine A Kraft; Krishanu Ray; Paula J C Cranfill; Korey A Wilson; Richard N Day; Rebekka M Wachter; Michael W Davidson; Megan A Rizzo
Journal:  PLoS One       Date:  2011-03-29       Impact factor: 3.240

7.  Haloalkane dehalogenases: structure of a Rhodococcus enzyme.

Authors:  J Newman; T S Peat; R Richard; L Kan; P E Swanson; J A Affholter; I H Holmes; J F Schindler; C J Unkefer; T C Terwilliger
Journal:  Biochemistry       Date:  1999-12-07       Impact factor: 3.162

8.  Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications.

Authors:  O Griesbeck; G S Baird; R E Campbell; D A Zacharias; R Y Tsien
Journal:  J Biol Chem       Date:  2001-05-31       Impact factor: 5.157

9.  FACS-based selection of tandem tetracysteine peptides with improved ReAsH brightness in live cells.

Authors:  Schuyler B Van Engelenburg; Theresa Nahreini; Amy E Palmer
Journal:  Chembiochem       Date:  2010-03-01       Impact factor: 3.164

10.  Conversion of red fluorescent protein into a bright blue probe.

Authors:  Oksana M Subach; Illia S Gundorov; Masami Yoshimura; Fedor V Subach; Jinghang Zhang; David Grüenwald; Ekaterina A Souslova; Dmitriy M Chudakov; Vladislav V Verkhusha
Journal:  Chem Biol       Date:  2008-10-20
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  84 in total

1.  Expansion microscopy of C. elegans.

Authors:  Chih-Chieh Jay Yu; Nicholas C Barry; Asmamaw T Wassie; Anubhav Sinha; Abhishek Bhattacharya; Shoh Asano; Chi Zhang; Fei Chen; Oliver Hobert; Miriam B Goodman; Gal Haspel; Edward S Boyden
Journal:  Elife       Date:  2020-05-01       Impact factor: 8.140

Review 2.  FRET-FLIM applications in plant systems.

Authors:  Christoph A Bücherl; Arjen Bader; Adrie H Westphal; Sergey P Laptenok; Jan Willem Borst
Journal:  Protoplasma       Date:  2014-01-04       Impact factor: 3.356

3.  DNA nanodevices map enzymatic activity in organelles.

Authors:  Krishna Dan; Aneesh T Veetil; Kasturi Chakraborty; Yamuna Krishnan
Journal:  Nat Nanotechnol       Date:  2019-02-11       Impact factor: 39.213

4.  Application of molecular dynamics simulations to design a dual-purpose oligopeptide linker sequence for fusion proteins.

Authors:  Ehsan Rezaie; Mozafar Mohammadi; Amirhossein Sakhteman; Peyman Bemani; Sajjad Ahrari
Journal:  J Mol Model       Date:  2018-10-15       Impact factor: 1.810

Review 5.  Single-molecule labeling for studying trafficking of renal transporters.

Authors:  Ankita Bachhawat Jaykumar; Paulo S Caceres; Pablo A Ortiz
Journal:  Am J Physiol Renal Physiol       Date:  2018-07-25

6.  Efficient and wash-free labeling of membrane proteins using engineered Npu DnaE split-inteins.

Authors:  Euiyeon Lee; Kyoungmi Min; Young-Tae Chang; Youngeun Kwon
Journal:  Protein Sci       Date:  2018-09-24       Impact factor: 6.725

7.  Quantifying transcription factor binding dynamics at the single-molecule level in live cells.

Authors:  Diego M Presman; David A Ball; Ville Paakinaho; Jonathan B Grimm; Luke D Lavis; Tatiana S Karpova; Gordon L Hager
Journal:  Methods       Date:  2017-03-15       Impact factor: 3.608

8.  Synchrotron microCT imaging of soft tissue in juvenile zebrafish reveals retinotectal projections.

Authors:  Xuying Xin; Darin Clark; Khai Chung Ang; Damian B van Rossum; Jean Copper; Xianghui Xiao; Patrick J La Riviere; Keith C Cheng
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-03-03

9.  A fluorogenic probe for the catalyst-free detection of azide-tagged molecules.

Authors:  Frédéric Friscourt; Christoph J Fahrni; Geert-Jan Boons
Journal:  J Am Chem Soc       Date:  2012-11-02       Impact factor: 15.419

10.  Bridging the spectral gap in fluorescent proteins through directed evolution.

Authors:  Paul B Whittredge; Justin W Taraska
Journal:  Chem Biol       Date:  2013-10-24
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