Literature DB >> 34373114

Liquid-liquid phase separation: a principal organizer of the cell's biochemical activity architecture.

Jason Z Zhang1, Sohum Mehta2, Jin Zhang3.   

Abstract

Numerous processes occur simultaneously in the cell both for normal function and in response to changes in the environment. The ability of cells to segregate biochemical reactions into separate compartments is essential to ensure specificity and efficiency in cellular processes. The discovery of liquid-liquid phase separation as a mechanism of compartmentalization has revised our thinking regarding the intracellular organization of molecular pathways such as signal transduction. Here, we highlight recent studies that advance our understanding of how phase separation impacts the organization of biochemical processes, with a particular focus on the tools used to study the functional impact of phase separation. In addition, we offer some of our perspectives on the pathological consequences of dysregulated phase separation in biochemical pathways.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2021        PMID: 34373114      PMCID: PMC8858030          DOI: 10.1016/j.tips.2021.07.003

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  92 in total

1.  Novel single chain cAMP sensors for receptor-induced signal propagation.

Authors:  Viacheslav O Nikolaev; Moritz Bünemann; Lutz Hein; Annette Hannawacker; Martin J Lohse
Journal:  J Biol Chem       Date:  2004-07-01       Impact factor: 5.157

2.  Partitioning of cancer therapeutics in nuclear condensates.

Authors:  Isaac A Klein; Ann Boija; Lena K Afeyan; Susana Wilson Hawken; Mengyang Fan; Alessandra Dall'Agnese; Ozgur Oksuz; Jonathan E Henninger; Krishna Shrinivas; Benjamin R Sabari; Ido Sagi; Victoria E Clark; Jesse M Platt; Mrityunjoy Kar; Patrick M McCall; Alicia V Zamudio; John C Manteiga; Eliot L Coffey; Charles H Li; Nancy M Hannett; Yang Eric Guo; Tim-Michael Decker; Tong Ihn Lee; Tinghu Zhang; Jing-Ke Weng; Dylan J Taatjes; Arup Chakraborty; Phillip A Sharp; Young Tae Chang; Anthony A Hyman; Nathanael S Gray; Richard A Young
Journal:  Science       Date:  2020-06-19       Impact factor: 47.728

3.  Phase separation of TAZ compartmentalizes the transcription machinery to promote gene expression.

Authors:  Yi Lu; Tiantian Wu; Orit Gutman; Huasong Lu; Qiang Zhou; Yoav I Henis; Kunxin Luo
Journal:  Nat Cell Biol       Date:  2020-03-23       Impact factor: 28.824

4.  Phase Transitions in the Assembly and Function of Human miRISC.

Authors:  Jessica Sheu-Gruttadauria; Ian J MacRae
Journal:  Cell       Date:  2018-03-22       Impact factor: 41.582

Review 5.  Genetically Encoded Fluorescent Biosensors Illuminate the Spatiotemporal Regulation of Signaling Networks.

Authors:  Eric C Greenwald; Sohum Mehta; Jin Zhang
Journal:  Chem Rev       Date:  2018-12-14       Impact factor: 60.622

6.  Functional compartmentation of cyclic AMP and protein kinase in heart.

Authors:  L L Brunton; J S Hayes; S E Mayer
Journal:  Adv Cyclic Nucleotide Res       Date:  1981

7.  Compartments of cyclic AMP and protein kinase in mammalian cardiomyocytes.

Authors:  I L Buxton; L L Brunton
Journal:  J Biol Chem       Date:  1983-09-10       Impact factor: 5.157

8.  cGAS phase separation inhibits TREX1-mediated DNA degradation and enhances cytosolic DNA sensing.

Authors:  Wen Zhou; Lisa Mohr; John Maciejowski; Philip J Kranzusch
Journal:  Mol Cell       Date:  2021-02-18       Impact factor: 17.970

9.  Mechanism of SOS PR-domain autoinhibition revealed by single-molecule assays on native protein from lysate.

Authors:  Young Kwang Lee; Shalini T Low-Nam; Jean K Chung; Scott D Hansen; Hiu Yue Monatrice Lam; Steven Alvarez; Jay T Groves
Journal:  Nat Commun       Date:  2017-04-28       Impact factor: 14.919

10.  Hypoxia drives the assembly of the multienzyme purinosome complex.

Authors:  Cyrielle Doigneaux; Anthony M Pedley; Ishna N Mistry; Monika Papayova; Stephen J Benkovic; Ali Tavassoli
Journal:  J Biol Chem       Date:  2020-05-21       Impact factor: 5.157

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  4 in total

Review 1.  Metabolic channeling: predictions, deductions, and evidence.

Authors:  Vidhi Pareek; Zhou Sha; Jingxuan He; Ned S Wingreen; Stephen J Benkovic
Journal:  Mol Cell       Date:  2021-09-16       Impact factor: 19.328

Review 2.  Liquid-liquid phase separation: Orchestrating cell signaling through time and space.

Authors:  Qi Su; Sohum Mehta; Jin Zhang
Journal:  Mol Cell       Date:  2021-10-06       Impact factor: 19.328

Review 3.  Proximity-Dependent Biotinylation Approaches to Explore the Dynamic Compartmentalized Proteome.

Authors:  Ugo Dionne; Anne-Claude Gingras
Journal:  Front Mol Biosci       Date:  2022-03-04

4.  Coupling Bulk Phase Separation of Disordered Proteins to Membrane Domain Formation in Molecular Simulations on a Bespoke Compute Fabric.

Authors:  Julian C Shillcock; David B Thomas; Jonathan R Beaumont; Graeme M Bragg; Mark L Vousden; Andrew D Brown
Journal:  Membranes (Basel)       Date:  2021-12-23
  4 in total

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