Literature DB >> 31543693

Efficient algorithms for Bayesian Nearest Neighbor Gaussian Processes.

Andrew O Finley1, Abhirup Datta2, Bruce C Cook3, Douglas C Morton3, Hans E Andersen4, Sudipto Banerjee5.   

Abstract

We consider alternate formulations of recently proposed hierarchical Nearest Neighbor Gaussian Process (NNGP) models (Datta et al., 2016a) for improved convergence, faster computing time, and more robust and reproducible Bayesian inference. Algorithms are defined that improve CPU memory management and exploit existing high-performance numerical linear algebra libraries. Computational and inferential benefits are assessed for alternate NNGP specifications using simulated datasets and remotely sensed light detection and ranging (LiDAR) data collected over the US Forest Service Tanana Inventory Unit (TIU) in a remote portion of Interior Alaska. The resulting data product is the first statistically robust map of forest canopy for the TIU.

Entities:  

Year:  2019        PMID: 31543693      PMCID: PMC6753955          DOI: 10.1080/10618600.2018.1537924

Source DB:  PubMed          Journal:  J Comput Graph Stat        ISSN: 1061-8600            Impact factor:   2.302


  11 in total

1.  Water availability predicts forest canopy height at the global scale.

Authors:  Tamir Klein; Christophe Randin; Christian Körner
Journal:  Ecol Lett       Date:  2015-10-01       Impact factor: 9.492

2.  High-resolution global maps of 21st-century forest cover change.

Authors:  M C Hansen; P V Potapov; R Moore; M Hancher; S A Turubanova; A Tyukavina; D Thau; S V Stehman; S J Goetz; T R Loveland; A Kommareddy; A Egorov; L Chini; C O Justice; J R G Townshend
Journal:  Science       Date:  2013-11-15       Impact factor: 47.728

3.  On nearest-neighbor Gaussian process models for massive spatial data.

Authors:  Abhirup Datta; Sudipto Banerjee; Andrew O Finley; Alan E Gelfand
Journal:  Wiley Interdiscip Rev Comput Stat       Date:  2016-08-04

4.  NONSEPARABLE DYNAMIC NEAREST NEIGHBOR GAUSSIAN PROCESS MODELS FOR LARGE SPATIO-TEMPORAL DATA WITH AN APPLICATION TO PARTICULATE MATTER ANALYSIS.

Authors:  Abhirup Datta; Sudipto Banerjee; Andrew O Finley; Nicholas A S Hamm; Martijn Schaap
Journal:  Ann Appl Stat       Date:  2016-09-28       Impact factor: 2.083

5.  Snow Grain Size Retrieval over the Polar Ice Sheets with the Ice, Cloud, and land Elevation Satellite (ICESat) Observations.

Authors:  Yuekui Yang; Alexander Marshak; Mei Han; Stephen P Palm; David J Harding
Journal:  J Quant Spectrosc Radiat Transf       Date:  2016-04-06       Impact factor: 2.468

6.  Meta-Kriging: Scalable Bayesian Modeling and Inference for Massive Spatial Datasets.

Authors:  Rajarshi Guhaniyogi; Sudipto Banerjee
Journal:  Technometrics       Date:  2018-06-06

7.  High-Dimensional Bayesian Geostatistics.

Authors:  Sudipto Banerjee
Journal:  Bayesian Anal       Date:  2017-05-16       Impact factor: 3.728

8.  Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets.

Authors:  Abhirup Datta; Sudipto Banerjee; Andrew O Finley; Alan E Gelfand
Journal:  J Am Stat Assoc       Date:  2016-08-18       Impact factor: 5.033

9.  Improving the performance of predictive process modeling for large datasets.

Authors:  Andrew O Finley; Huiyan Sang; Sudipto Banerjee; Alan E Gelfand
Journal:  Comput Stat Data Anal       Date:  2009-06-15       Impact factor: 1.681

10.  Gaussian predictive process models for large spatial data sets.

Authors:  Sudipto Banerjee; Alan E Gelfand; Andrew O Finley; Huiyan Sang
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2008-09-01       Impact factor: 4.488

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  4 in total

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Journal:  Spat Stat       Date:  2020-02-07

2.  Spatial Multivariate Trees for Big Data Bayesian Regression.

Authors:  Michele Peruzzi; David B Dunson
Journal:  J Mach Learn Res       Date:  2022       Impact factor: 5.177

3.  Highly Scalable Bayesian Geostatistical Modeling via Meshed Gaussian Processes on Partitioned Domains.

Authors:  Michele Peruzzi; Sudipto Banerjee; Andrew O Finley
Journal:  J Am Stat Assoc       Date:  2020-11-24       Impact factor: 4.369

4.  Computationally efficient joint species distribution modeling of big spatial data.

Authors:  Gleb Tikhonov; Li Duan; Nerea Abrego; Graeme Newell; Matt White; David Dunson; Otso Ovaskainen
Journal:  Ecology       Date:  2019-12-20       Impact factor: 5.499

  4 in total

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