Literature DB >> 29657659

NONSEPARABLE DYNAMIC NEAREST NEIGHBOR GAUSSIAN PROCESS MODELS FOR LARGE SPATIO-TEMPORAL DATA WITH AN APPLICATION TO PARTICULATE MATTER ANALYSIS.

Abhirup Datta1, Sudipto Banerjee2, Andrew O Finley3, Nicholas A S Hamm4, Martijn Schaap5.   

Abstract

Particulate matter (PM) is a class of malicious environmental pollutants known to be detrimental to human health. Regulatory efforts aimed at curbing PM levels in different countries often require high resolution space-time maps that can identify red-flag regions exceeding statutory concentration limits. Continuous spatio-temporal Gaussian Process (GP) models can deliver maps depicting predicted PM levels and quantify predictive uncertainty. However, GP-based approaches are usually thwarted by computational challenges posed by large datasets. We construct a novel class of scalable Dynamic Nearest Neighbor Gaussian Process (DNNGP) models that can provide a sparse approximation to any spatio-temporal GP (e.g., with nonseparable covariance structures). The DNNGP we develop here can be used as a sparsity-inducing prior for spatio-temporal random effects in any Bayesian hierarchical model to deliver full posterior inference. Storage and memory requirements for a DNNGP model are linear in the size of the dataset, thereby delivering massive scalability without sacrificing inferential richness. Extensive numerical studies reveal that the DNNGP provides substantially superior approximations to the underlying process than low-rank approximations. Finally, we use the DNNGP to analyze a massive air quality dataset to substantially improve predictions of PM levels across Europe in conjunction with the LOTOS-EUROS chemistry transport models (CTMs).

Entities:  

Keywords:  Bayesian inference; Markov chain Monte Carlo; Nonseparable spatio-temporal models; environmental pollutants; nearest neighbors; scalable Gaussian process

Year:  2016        PMID: 29657659      PMCID: PMC5898455          DOI: 10.1214/16-AOAS931

Source DB:  PubMed          Journal:  Ann Appl Stat        ISSN: 1932-6157            Impact factor:   2.083


  8 in total

Review 1.  Air pollution and health.

Authors:  Bert Brunekreef; Stephen T Holgate
Journal:  Lancet       Date:  2002-10-19       Impact factor: 79.321

2.  Exposure assessment for estimation of the global burden of disease attributable to outdoor air pollution.

Authors:  Michael Brauer; Markus Amann; Rick T Burnett; Aaron Cohen; Frank Dentener; Majid Ezzati; Sarah B Henderson; Michal Krzyzanowski; Randall V Martin; Rita Van Dingenen; Aaron van Donkelaar; George D Thurston
Journal:  Environ Sci Technol       Date:  2012-01-06       Impact factor: 9.028

3.  Spatial mapping of ozone and SO2 trends in Europe.

Authors:  Bruce Denby; Ingrid Sundvor; Massimo Cassiani; Peter de Smet; Frank de Leeuw; Jan Horálek
Journal:  Sci Total Environ       Date:  2010-09-15       Impact factor: 7.963

4.  HIERARCHICAL SPATIAL MODELS FOR PREDICTING TREE SPECIES ASSEMBLAGES ACROSS LARGE DOMAINS.

Authors:  Andrew O Finley; Sudipto Banerjee; Ronald E McRoberts
Journal:  Ann Appl Stat       Date:  2009-09-01       Impact factor: 2.083

5.  A comparison of reanalysis techniques: applying optimal interpolation and Ensemble Kalman Filtering to improve air quality monitoring at mesoscale.

Authors:  Gabriele Candiani; Claudio Carnevale; Giovanna Finzi; Enrico Pisoni; Marialuisa Volta
Journal:  Sci Total Environ       Date:  2013-04-29       Impact factor: 7.963

6.  The carcinogenicity of outdoor air pollution.

Authors:  Dana Loomis; Yann Grosse; Béatrice Lauby-Secretan; Fatiha El Ghissassi; Véronique Bouvard; Lamia Benbrahim-Tallaa; Neela Guha; Robert Baan; Heidi Mattock; Kurt Straif
Journal:  Lancet Oncol       Date:  2013-12       Impact factor: 41.316

7.  Gaussian predictive process models for large spatial data sets.

Authors:  Sudipto Banerjee; Alan E Gelfand; Andrew O Finley; Huiyan Sang
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2008-09-01       Impact factor: 4.488

Review 8.  Long-term air pollution exposure and cardio- respiratory mortality: a review.

Authors:  Gerard Hoek; Ranjini M Krishnan; Rob Beelen; Annette Peters; Bart Ostro; Bert Brunekreef; Joel D Kaufman
Journal:  Environ Health       Date:  2013-05-28       Impact factor: 5.984

  8 in total
  9 in total

1.  Permutation and Grouping Methods for Sharpening Gaussian Process Approximations.

Authors:  Joseph Guinness
Journal:  Technometrics       Date:  2018-06-18

2.  Practical Bayesian Modeling and Inference for Massive Spatial Datasets On Modest Computing Environments.

Authors:  Lu Zhang; Abhirup Datta; Sudipto Banerjee
Journal:  Stat Anal Data Min       Date:  2019-04-23       Impact factor: 1.051

3.  Efficient Bayesian hierarchical functional data analysis with basis function approximations using Gaussian-Wishart processes.

Authors:  Jingjing Yang; Dennis D Cox; Jong Soo Lee; Peng Ren; Taeryon Choi
Journal:  Biometrics       Date:  2017-04-10       Impact factor: 2.571

4.  Modeling Massive Spatial Datasets Using a Conjugate Bayesian Linear Modeling Framework.

Authors:  Sudipto Banerjee
Journal:  Spat Stat       Date:  2020-02-07

5.  Spatial Multivariate Trees for Big Data Bayesian Regression.

Authors:  Michele Peruzzi; David B Dunson
Journal:  J Mach Learn Res       Date:  2022       Impact factor: 5.177

6.  Highly Scalable Bayesian Geostatistical Modeling via Meshed Gaussian Processes on Partitioned Domains.

Authors:  Michele Peruzzi; Sudipto Banerjee; Andrew O Finley
Journal:  J Am Stat Assoc       Date:  2020-11-24       Impact factor: 4.369

7.  Efficient algorithms for Bayesian Nearest Neighbor Gaussian Processes.

Authors:  Andrew O Finley; Abhirup Datta; Bruce C Cook; Douglas C Morton; Hans E Andersen; Sudipto Banerjee
Journal:  J Comput Graph Stat       Date:  2019-04-01       Impact factor: 2.302

8.  Scalable penalized spatiotemporal land-use regression for ground-level nitrogen dioxide.

Authors:  Kyle P Messier; Matthias Katzfuss
Journal:  Ann Appl Stat       Date:  2021-07-12       Impact factor: 2.083

9.  A Case Study Competition Among Methods for Analyzing Large Spatial Data.

Authors:  Matthew J Heaton; Abhirup Datta; Andrew O Finley; Reinhard Furrer; Joseph Guinness; Rajarshi Guhaniyogi; Florian Gerber; Robert B Gramacy; Dorit Hammerling; Matthias Katzfuss; Finn Lindgren; Douglas W Nychka; Furong Sun; Andrew Zammit-Mangion
Journal:  J Agric Biol Environ Stat       Date:  2018-12-14       Impact factor: 1.524

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.