Literature DB >> 29657666

On nearest-neighbor Gaussian process models for massive spatial data.

Abhirup Datta1, Sudipto Banerjee2, Andrew O Finley3,4, Alan E Gelfand5.   

Abstract

Gaussian Process (GP) models provide a very flexible nonparametric approach to modeling location-and-time indexed datasets. However, the storage and computational requirements for GP models are infeasible for large spatial datasets. Nearest Neighbor Gaussian Processes (Datta A, Banerjee S, Finley AO, Gelfand AE. Hierarchical nearest-neighbor gaussian process models for large geostatistical datasets. J Am Stat Assoc 2016., JASA) provide a scalable alternative by using local information from few nearest neighbors. Scalability is achieved by using the neighbor sets in a conditional specification of the model. We show how this is equivalent to sparse modeling of Cholesky factors of large covariance matrices. We also discuss a general approach to construct scalable Gaussian Processes using sparse local kriging. We present a multivariate data analysis which demonstrates how the nearest neighbor approach yields inference indistinguishable from the full rank GP despite being several times faster. Finally, we also propose a variant of the NNGP model for automating the selection of the neighbor set size.

Entities:  

Keywords:  Bayesian methods and theory; computational Bayesian methods; data structures; image and spatial data

Year:  2016        PMID: 29657666      PMCID: PMC5894878          DOI: 10.1002/wics.1383

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Comput Stat        ISSN: 1939-0068


  4 in total

1.  Scaling Multidimensional Inference for Structured Gaussian Processes.

Authors:  Elad Gilboa; Yunus Saatçi; John P Cunningham
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2015-02       Impact factor: 6.226

2.  HIERARCHICAL SPATIAL MODELS FOR PREDICTING TREE SPECIES ASSEMBLAGES ACROSS LARGE DOMAINS.

Authors:  Andrew O Finley; Sudipto Banerjee; Ronald E McRoberts
Journal:  Ann Appl Stat       Date:  2009-09-01       Impact factor: 2.083

3.  Hierarchical Spatial Process Models for Multiple Traits in Large Genetic Trials.

Authors:  Sudipto Banerjee; Andrew O Finley; Patrik Waldmann; Tore Ericsson
Journal:  J Am Stat Assoc       Date:  2010-06-01       Impact factor: 5.033

4.  Gaussian predictive process models for large spatial data sets.

Authors:  Sudipto Banerjee; Alan E Gelfand; Andrew O Finley; Huiyan Sang
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2008-09-01       Impact factor: 4.488

  4 in total
  4 in total

1.  Permutation and Grouping Methods for Sharpening Gaussian Process Approximations.

Authors:  Joseph Guinness
Journal:  Technometrics       Date:  2018-06-18

2.  A bioinformatic analysis of WFDC2 (HE4) expression in high grade serous ovarian cancer reveals tumor-specific changes in metabolic and extracellular matrix gene expression.

Authors:  Nicole E James; Megan Gura; Morgan Woodman; Richard N Freiman; Jennifer R Ribeiro
Journal:  Med Oncol       Date:  2022-05-15       Impact factor: 3.738

3.  Efficient algorithms for Bayesian Nearest Neighbor Gaussian Processes.

Authors:  Andrew O Finley; Abhirup Datta; Bruce C Cook; Douglas C Morton; Hans E Andersen; Sudipto Banerjee
Journal:  J Comput Graph Stat       Date:  2019-04-01       Impact factor: 2.302

4.  A Case Study Competition Among Methods for Analyzing Large Spatial Data.

Authors:  Matthew J Heaton; Abhirup Datta; Andrew O Finley; Reinhard Furrer; Joseph Guinness; Rajarshi Guhaniyogi; Florian Gerber; Robert B Gramacy; Dorit Hammerling; Matthias Katzfuss; Finn Lindgren; Douglas W Nychka; Furong Sun; Andrew Zammit-Mangion
Journal:  J Agric Biol Environ Stat       Date:  2018-12-14       Impact factor: 1.524

  4 in total

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