Literature DB >> 29391920

High-Dimensional Bayesian Geostatistics.

Sudipto Banerjee1.   

Abstract

With the growing capabilities of Geographic Information Systems (GIS) and user-friendly software, statisticians today routinely encounter geographically referenced data containing observations from a large number of spatial locations and time points. Over the last decade, hierarchical spatiotemporal process models have become widely deployed statistical tools for researchers to better understand the complex nature of spatial and temporal variability. However, fitting hierarchical spatiotemporal models often involves expensive matrix computations with complexity increasing in cubic order for the number of spatial locations and temporal points. This renders such models unfeasible for large data sets. This article offers a focused review of two methods for constructing well-defined highly scalable spatiotemporal stochastic processes. Both these processes can be used as "priors" for spatiotemporal random fields. The first approach constructs a low-rank process operating on a lower-dimensional subspace. The second approach constructs a Nearest-Neighbor Gaussian Process (NNGP) that ensures sparse precision matrices for its finite realizations. Both processes can be exploited as a scalable prior embedded within a rich hierarchical modeling framework to deliver full Bayesian inference. These approaches can be described as model-based solutions for big spatiotemporal datasets. The models ensure that the algorithmic complexity has ~ n floating point operations (flops), where n the number of spatial locations (per iteration). We compare these methods and provide some insight into their methodological underpinnings.

Entities:  

Keywords:  Bayesian statistics; Gaussian process; Nearest Neighbor Gaussian process (NNGP); low rank Gaussian process; predictive process; sparse Gaussian process; spatiotemporal statistics

Year:  2017        PMID: 29391920      PMCID: PMC5790125          DOI: 10.1214/17-BA1056R

Source DB:  PubMed          Journal:  Bayesian Anal        ISSN: 1931-6690            Impact factor:   3.728


  8 in total

1.  Generalized common spatial factor model.

Authors:  Fujun Wang; Melanie M Wall
Journal:  Biostatistics       Date:  2003-10       Impact factor: 5.899

2.  Spatial Modelling Using a New Class of Nonstationary Covariance Functions.

Authors:  Christopher J Paciorek; Mark J Schervish
Journal:  Environmetrics       Date:  2006       Impact factor: 1.900

3.  Approximate likelihood for large irregularly spaced spatial data.

Authors:  Montserrat Fuentes
Journal:  J Am Stat Assoc       Date:  2007-03       Impact factor: 5.033

4.  HIERARCHICAL SPATIAL MODELS FOR PREDICTING TREE SPECIES ASSEMBLAGES ACROSS LARGE DOMAINS.

Authors:  Andrew O Finley; Sudipto Banerjee; Ronald E McRoberts
Journal:  Ann Appl Stat       Date:  2009-09-01       Impact factor: 2.083

5.  Hierarchical Spatial Process Models for Multiple Traits in Large Genetic Trials.

Authors:  Sudipto Banerjee; Andrew O Finley; Patrik Waldmann; Tore Ericsson
Journal:  J Am Stat Assoc       Date:  2010-06-01       Impact factor: 5.033

6.  Improving the performance of predictive process modeling for large datasets.

Authors:  Andrew O Finley; Huiyan Sang; Sudipto Banerjee; Alan E Gelfand
Journal:  Comput Stat Data Anal       Date:  2009-06-15       Impact factor: 1.681

7.  Hierarchical factor models for large spatially misaligned data: a low-rank predictive process approach.

Authors:  Qian Ren; Sudipto Banerjee
Journal:  Biometrics       Date:  2013-02-04       Impact factor: 2.571

8.  Gaussian predictive process models for large spatial data sets.

Authors:  Sudipto Banerjee; Alan E Gelfand; Andrew O Finley; Huiyan Sang
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2008-09-01       Impact factor: 4.488

  8 in total
  8 in total

1.  Bayesian Zero-Inflated Negative Binomial Regression Based on Pólya-Gamma Mixtures.

Authors:  Brian Neelon
Journal:  Bayesian Anal       Date:  2019-06-11       Impact factor: 3.728

2.  Coastline Kriging: A Bayesian Approach.

Authors:  Nada Abdalla; Sudipto Banerjee; Gurumurthy Ramachandran; Mark Stenzel; Patricia A Stewart
Journal:  Ann Work Expo Health       Date:  2018-08-13       Impact factor: 2.179

3.  Practical Bayesian Modeling and Inference for Massive Spatial Datasets On Modest Computing Environments.

Authors:  Lu Zhang; Abhirup Datta; Sudipto Banerjee
Journal:  Stat Anal Data Min       Date:  2019-04-23       Impact factor: 1.051

4.  Modeling Massive Spatial Datasets Using a Conjugate Bayesian Linear Modeling Framework.

Authors:  Sudipto Banerjee
Journal:  Spat Stat       Date:  2020-02-07

5.  Spatial Multivariate Trees for Big Data Bayesian Regression.

Authors:  Michele Peruzzi; David B Dunson
Journal:  J Mach Learn Res       Date:  2022       Impact factor: 5.177

6.  Highly Scalable Bayesian Geostatistical Modeling via Meshed Gaussian Processes on Partitioned Domains.

Authors:  Michele Peruzzi; Sudipto Banerjee; Andrew O Finley
Journal:  J Am Stat Assoc       Date:  2020-11-24       Impact factor: 4.369

7.  Efficient algorithms for Bayesian Nearest Neighbor Gaussian Processes.

Authors:  Andrew O Finley; Abhirup Datta; Bruce C Cook; Douglas C Morton; Hans E Andersen; Sudipto Banerjee
Journal:  J Comput Graph Stat       Date:  2019-04-01       Impact factor: 2.302

8.  Tuberculosis in badgers where the bovine tuberculosis epidemic is expanding in cattle in England.

Authors:  Benjamin Michael Connor Swift; Elsa Sandoval Barron; Rob Christley; Davide Corbetta; Llorenç Grau-Roma; Chris Jewell; Colman O'Cathail; Andy Mitchell; Jess Phoenix; Alison Prosser; Catherine Rees; Marion Sorley; Ranieri Verin; Malcolm Bennett
Journal:  Sci Rep       Date:  2021-10-25       Impact factor: 4.379

  8 in total

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