Literature DB >> 29720777

Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets.

Abhirup Datta, Sudipto Banerjee, Andrew O Finley, Alan E Gelfand.   

Abstract

Spatial process models for analyzing geostatistical data entail computations that become prohibitive as the number of spatial locations become large. This article develops a class of highly scalable nearest-neighbor Gaussian process (NNGP) models to provide fully model-based inference for large geostatistical datasets. We establish that the NNGP is a well-defined spatial process providing legitimate finite-dimensional Gaussian densities with sparse precision matrices. We embed the NNGP as a sparsity-inducing prior within a rich hierarchical modeling framework and outline how computationally efficient Markov chain Monte Carlo (MCMC) algorithms can be executed without storing or decomposing large matrices. The floating point operations (flops) per iteration of this algorithm is linear in the number of spatial locations, thereby rendering substantial scalability. We illustrate the computational and inferential benefits of the NNGP over competing methods using simulation studies and also analyze forest biomass from a massive U.S. Forest Inventory dataset at a scale that precludes alternative dimension-reducing methods. Supplementary materials for this article are available online.

Entities:  

Keywords:  Bayesian modeling; Gaussian process; Hierarchical models; Markov chain Monte Carlo; Nearest neighbors; Predictive process; Reduced-rank models; Sparse precision matrices; Spatial cross-covariance functions

Year:  2016        PMID: 29720777      PMCID: PMC5927603          DOI: 10.1080/01621459.2015.1044091

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  3 in total

1.  HIERARCHICAL SPATIAL MODELS FOR PREDICTING TREE SPECIES ASSEMBLAGES ACROSS LARGE DOMAINS.

Authors:  Andrew O Finley; Sudipto Banerjee; Ronald E McRoberts
Journal:  Ann Appl Stat       Date:  2009-09-01       Impact factor: 2.083

2.  Hierarchical Spatial Process Models for Multiple Traits in Large Genetic Trials.

Authors:  Sudipto Banerjee; Andrew O Finley; Patrik Waldmann; Tore Ericsson
Journal:  J Am Stat Assoc       Date:  2010-06-01       Impact factor: 5.033

3.  Gaussian predictive process models for large spatial data sets.

Authors:  Sudipto Banerjee; Alan E Gelfand; Andrew O Finley; Huiyan Sang
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2008-09-01       Impact factor: 4.488

  3 in total
  21 in total

1.  Permutation and Grouping Methods for Sharpening Gaussian Process Approximations.

Authors:  Joseph Guinness
Journal:  Technometrics       Date:  2018-06-18

2.  Scalar-on-Image Regression via the Soft-Thresholded Gaussian Process.

Authors:  Jian Kang; Brian J Reich; Ana-Maria Staicu
Journal:  Biometrika       Date:  2018-01-19       Impact factor: 2.445

3.  Alternating Gaussian Process Modulated Renewal Processes for Modeling Threshold Exceedances and Durations.

Authors:  Erin M Schliep; Alan E Gelfand; David M Holland
Journal:  Stoch Environ Res Risk Assess       Date:  2018-02       Impact factor: 3.379

4.  Statistical field calibration of a low-cost PM2.5 monitoring network in Baltimore.

Authors:  Abhirup Datta; Arkajyoti Saha; Misti Levy Zamora; Colby Buehler; Lei Hao; Fulizi Xiong; Drew R Gentner; Kirsten Koehler
Journal:  Atmos Environ (1994)       Date:  2020-07-22       Impact factor: 4.798

5.  Mapping local and global variability in plant trait distributions.

Authors:  Ethan E Butler; Abhirup Datta; Habacuc Flores-Moreno; Ming Chen; Kirk R Wythers; Farideh Fazayeli; Arindam Banerjee; Owen K Atkin; Jens Kattge; Bernard Amiaud; Benjamin Blonder; Gerhard Boenisch; Ben Bond-Lamberty; Kerry A Brown; Chaeho Byun; Giandiego Campetella; Bruno E L Cerabolini; Johannes H C Cornelissen; Joseph M Craine; Dylan Craven; Franciska T de Vries; Sandra Díaz; Tomas F Domingues; Estelle Forey; Andrés González-Melo; Nicolas Gross; Wenxuan Han; Wesley N Hattingh; Thomas Hickler; Steven Jansen; Koen Kramer; Nathan J B Kraft; Hiroko Kurokawa; Daniel C Laughlin; Patrick Meir; Vanessa Minden; Ülo Niinemets; Yusuke Onoda; Josep Peñuelas; Quentin Read; Lawren Sack; Brandon Schamp; Nadejda A Soudzilovskaia; Marko J Spasojevic; Enio Sosinski; Peter E Thornton; Fernando Valladares; Peter M van Bodegom; Mathew Williams; Christian Wirth; Peter B Reich
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-01       Impact factor: 11.205

6.  Practical Bayesian Modeling and Inference for Massive Spatial Datasets On Modest Computing Environments.

Authors:  Lu Zhang; Abhirup Datta; Sudipto Banerjee
Journal:  Stat Anal Data Min       Date:  2019-04-23       Impact factor: 1.051

7.  Efficient Bayesian hierarchical functional data analysis with basis function approximations using Gaussian-Wishart processes.

Authors:  Jingjing Yang; Dennis D Cox; Jong Soo Lee; Peng Ren; Taeryon Choi
Journal:  Biometrics       Date:  2017-04-10       Impact factor: 2.571

8.  Efficient algorithms for Bayesian Nearest Neighbor Gaussian Processes.

Authors:  Andrew O Finley; Abhirup Datta; Bruce C Cook; Douglas C Morton; Hans E Andersen; Sudipto Banerjee
Journal:  J Comput Graph Stat       Date:  2019-04-01       Impact factor: 2.302

9.  A Semiparametric Bayesian Approach to Dropout in Longitudinal Studies with Auxiliary Covariates.

Authors:  Tianjian Zhou; Michael J Daniels; Peter Müller
Journal:  J Comput Graph Stat       Date:  2019-07-02       Impact factor: 2.302

10.  Scalable penalized spatiotemporal land-use regression for ground-level nitrogen dioxide.

Authors:  Kyle P Messier; Matthias Katzfuss
Journal:  Ann Appl Stat       Date:  2021-07-12       Impact factor: 2.083

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