| Literature DB >> 30939164 |
Rosa M S Visscher1,2, Nina Feddermann-Demont2,3, Fausto Romano2,3, Dominik Straumann2,3, Giovanni Bertolini2,3.
Abstract
OBJECTIVES: We propose a bottom-up, machine-learning approach, for the objective vestibular and balance diagnostic data of concussion patients, to provide insight into the differences in patients' phenotypes, independent of existing diagnoses (unsupervised learning).Entities:
Mesh:
Year: 2019 PMID: 30939164 PMCID: PMC6445465 DOI: 10.1371/journal.pone.0214525
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Epidemiological data for the included patients.
IQR = interquartile range; SCC = Swiss Concussion Center.
| Male | Female | |
|---|---|---|
| 78 (81.3) | 18 (18.7) | |
| 25.0 [11.0] | 25.0 [13.0] | |
| ≤ 2 weeks (15.4) | ≤ 2 weeks (5.6) | |
| ≤ 4 weeks (19.2) | ≤ 4 weeks (16.7) | |
| ≤ 3 months (34.6) | ≤ 3 months (22.2) | |
| > 3 months (30.8) | > 3 months (55.6) | |
| Ice hockey (57.7) | Ski & Snowboard (27.8) | |
| Soccer (7.7) | Ice hockey (11.1) | |
| Handball (5.1) | Handball (11.1) | |
| Anterograde (23.4) | Retrograde (25.0) | |
| Retrograde (13.0) | Anterograde (9.1) | |
| Headache (66.7) | Headache (62.5) | |
| Dizziness (47.0) | Dizziness (56.3) | |
| Neck pain (42.2) | Difficulty concentrating (37.5) | |
| Difficulty concentrating (39.4) | Blurred vision (37.5) | |
| Blurred vision (28.8) | Neck pain (18.8) | |
| Sensitivity to light (22.7) | Sensitivity to light (18.8) | |
| Balance problems (20.0) | Balance problems (18.8) | |
| Feeling confused (6.1) | Nausea (12.5) | |
| Coordination problems (4.5) | Difficulty remembering (6.3) | |
| Nausea (3.0) | Feeling confused (0.0) | |
| Difficulty remembering (0.0) | Coordination problems (0.0) | |
| Feeling slowed down (0.0) | Feeling slowed down (0.0) |
Fig 1Comparison between clustering outcomes of the k-means and SOM.
(A) Venn diagram of the overlap between the k-means and the SOM. (B) Overlap between the two clustering methods shown as the percentage of patients from each group identified by the SOM that was identically classified by the k-means. For visualization, the two groups are drawn on the map of layer 5 of the SOM.
Outcomes of the leave-one-variable-out and leave-one-test-out analyses to evaluate the dependency of the SOM on specific inputs.
DVA = dynamic visual acuity; SOT = sensory organization test; V-HIT = video head impulse test; General = sex/age/time since concussive incident/sport type; SVV = subjective visual vertical; VEMPs = cervical and ocular vestibular-evoked myogenic potential; mSPV = maximal speed of the slow phase velocity.
| Leave-one-test-out | Leave-one-variable-out | ||
|---|---|---|---|
| Without the following test | Clustered differently [%] | Without the following variable | Clustered differently [%] |
| Caloric | 24 | mSPV-44 | 19 |
| mSPV-sum | 17 | ||
| mSPV-30 | 17 | ||
| Index-30 | 11 | ||
| Index-44 | 9 | ||
| Difference | 8 | ||
| Dominancy | 5 | ||
| DVA | 24 | Static | 19 |
| Dynamic | 17 | ||
| Loss | 14 | ||
| Velocity | 6 | ||
| SOT | 15 | ||
| Fundus | 13 | ||
| V-HIT | 13 | ||
| General | 10 | ||
| SVV | 9 | ||
| VEMPs | 7 | ||
Confidence intervals per test for each subgroup and the effect sizes of the difference between the subgroups.
| Sig. different variables | Group 1 | Group 2 | Effect size |
|---|---|---|---|
| Median[IQR] | Median[IQR] | Eta squared | |
| ↓ 69.00 [22.30] | ↑ 79.00 [10.50] | 13.2% | |
| ↑ 0.38 [0.84] | ↓ 0.20 [0.20] | 18.6% | |
| ↑ -0.03 [0.33] | ↓-0.14 [0.12] | 19.5% | |
| ↓ 7.25 [6.70] | ↑ -13.30 [10.00] | 19.5% | |
| ↓ 7.30 [6.20] | ↑12.35 [9.50] | 25.3% | |
| ↓ 27.60 [18.20] | ↑ 50.95 [31.00] | 30.7% |
*α<0.001 for all variables in the independent variables Mann-Whitney-U test on normalized data
IQR = interquartile range; SOT-cs = sensory organization test composite score; DVA = dynamic visual acuity measured as log of the minimum angle resolvable; mSPV = maximal speed of the slow phase velocity measured in degrees per second; 30 and 44 refer to the temperature of the water used; sum = summary score calculated by caloric software; Effect size for eta squared:
† >0.1 for a small effect
‡>0.3 for a medium effect, and >0.5 for a large effect.[53].
Difference in frequency for current symptoms reported by patient.
| More in Group 1 | More in group 2 | Similar in both groups |
|---|---|---|
| [≥10% diff] | [≥10% diff] | [<10% diff] |
| Headache | Anterograde Amnesia | Sensitivity to light |
| [76 vs. 59%] | [14 vs. 24%] | [27 vs. 18%] |
| Blurred vision | Dizziness | |
| [39 vs. 24%] | [45 vs. 51%] | |
| Balance problems | Difficulty concentrating | |
| [27 vs. 15%] | [39 vs. 39%] |