Literature DB >> 19070668

Machine learning classifiers and fMRI: a tutorial overview.

Francisco Pereira1, Tom Mitchell, Matthew Botvinick.   

Abstract

Interpreting brain image experiments requires analysis of complex, multivariate data. In recent years, one analysis approach that has grown in popularity is the use of machine learning algorithms to train classifiers to decode stimuli, mental states, behaviours and other variables of interest from fMRI data and thereby show the data contain information about them. In this tutorial overview we review some of the key choices faced in using this approach as well as how to derive statistically significant results, illustrating each point from a case study. Furthermore, we show how, in addition to answering the question of 'is there information about a variable of interest' (pattern discrimination), classifiers can be used to tackle other classes of question, namely 'where is the information' (pattern localization) and 'how is that information encoded' (pattern characterization).

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Year:  2008        PMID: 19070668      PMCID: PMC2892746          DOI: 10.1016/j.neuroimage.2008.11.007

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  23 in total

1.  Thresholding of statistical maps in functional neuroimaging using the false discovery rate.

Authors:  Christopher R Genovese; Nicole A Lazar; Thomas Nichols
Journal:  Neuroimage       Date:  2002-04       Impact factor: 6.556

2.  Generalizable patterns in neuroimaging: how many principal components?

Authors:  L K Hansen; J Larsen; F A Nielsen; S C Strother; E Rostrup; R Savoy; N Lange; J Sidtis; C Svarer; O B Paulson
Journal:  Neuroimage       Date:  1999-05       Impact factor: 6.556

3.  Patterns of activity in the categorical representations of objects.

Authors:  Thomas A Carlson; Paul Schrater; Sheng He
Journal:  J Cogn Neurosci       Date:  2003-07-01       Impact factor: 3.225

4.  Combinatorial codes in ventral temporal lobe for object recognition: Haxby (2001) revisited: is there a "face" area?

Authors:  Stephen José Hanson; Toshihiko Matsuka; James V Haxby
Journal:  Neuroimage       Date:  2004-09       Impact factor: 6.556

5.  Permutation tests for classification: towards statistical significance in image-based studies.

Authors:  Polina Golland; Bruce Fischl
Journal:  Inf Process Med Imaging       Date:  2003-07

6.  Partially distributed representations of objects and faces in ventral temporal cortex.

Authors:  Alice J O'Toole; Fang Jiang; Hervé Abdi; James V Haxby
Journal:  J Cogn Neurosci       Date:  2005-04       Impact factor: 3.225

7.  Partial least squares analysis of neuroimaging data: applications and advances.

Authors:  Anthony Randal McIntosh; Nancy J Lobaugh
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

8.  Predicting human brain activity associated with the meanings of nouns.

Authors:  Tom M Mitchell; Svetlana V Shinkareva; Andrew Carlson; Kai-Min Chang; Vicente L Malave; Robert A Mason; Marcel Adam Just
Journal:  Science       Date:  2008-05-30       Impact factor: 47.728

9.  Distributed and overlapping representations of faces and objects in ventral temporal cortex.

Authors:  J V Haxby; M I Gobbini; M L Furey; A Ishai; J L Schouten; P Pietrini
Journal:  Science       Date:  2001-09-28       Impact factor: 47.728

10.  Decoding the visual and subjective contents of the human brain.

Authors:  Yukiyasu Kamitani; Frank Tong
Journal:  Nat Neurosci       Date:  2005-04-24       Impact factor: 24.884

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  492 in total

1.  Primary somatosensory cortex discriminates affective significance in social touch.

Authors:  Valeria Gazzola; Michael L Spezio; Joset A Etzel; Fulvia Castelli; Ralph Adolphs; Christian Keysers
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

2.  Is race erased? Decoding race from patterns of neural activity when skin color is not diagnostic of group boundaries.

Authors:  Kyle G Ratner; Christian Kaul; Jay J Van Bavel
Journal:  Soc Cogn Affect Neurosci       Date:  2012-06-01       Impact factor: 3.436

3.  Classification of sodium MRI data of cartilage using machine learning.

Authors:  Guillaume Madelin; Frederick Poidevin; Antonios Makrymallis; Ravinder R Regatte
Journal:  Magn Reson Med       Date:  2014-11-03       Impact factor: 4.668

4.  Multi-voxel pattern analysis of fMRI data predicts clinical symptom severity.

Authors:  Marc N Coutanche; Sharon L Thompson-Schill; Robert T Schultz
Journal:  Neuroimage       Date:  2011-04-13       Impact factor: 6.556

5.  The Relevance Voxel Machine (RVoxM): a Bayesian method for image-based prediction.

Authors:  Mert R Sabuncu; Koen Van Leemput
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

6.  Tracking children's mental states while solving algebra equations.

Authors:  John R Anderson; Shawn Betts; Jennifer L Ferris; Jon M Fincham
Journal:  Hum Brain Mapp       Date:  2011-09-20       Impact factor: 5.038

7.  Baseline activity predicts working memory load of preceding task condition.

Authors:  Martin Pyka; Tim Hahn; Dominik Heider; Axel Krug; Jens Sommer; Tilo Kircher; Andreas Jansen
Journal:  Hum Brain Mapp       Date:  2012-06-13       Impact factor: 5.038

8.  Predicting response to psychiatric surgery: a systematic review of neuroimaging findings.

Authors:  Benjamin Davidson; Hrishikesh Suresh; Maged Goubran; Jennifer S Rabin; Ying Meng; Karim Mithani; Christopher B Pople; Peter Giacobbe; Clement Hamani; Nir Lipsman
Journal:  J Psychiatry Neurosci       Date:  2020-11-01       Impact factor: 6.186

9.  Cortical responses to dynamic emotional facial expressions generalize across stimuli, and are sensitive to task-relevance, in adults with and without Autism.

Authors:  Dorit Kliemann; Hilary Richardson; Stefano Anzellotti; Dima Ayyash; Amanda J Haskins; John D E Gabrieli; Rebecca R Saxe
Journal:  Cortex       Date:  2018-02-21       Impact factor: 4.027

Review 10.  Annual research review: Current limitations and future directions in MRI studies of child- and adult-onset developmental psychopathologies.

Authors:  Guillermo Horga; Tejal Kaur; Bradley S Peterson
Journal:  J Child Psychol Psychiatry       Date:  2014-01-20       Impact factor: 8.982

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