| Literature DB >> 30517157 |
Leonardo Seidi Shigueoka1, José Paulo Cabral de Vasconcellos1, Rui Barroso Schimiti1, Alexandre Soares Castro Reis1, Gabriel Ozeas de Oliveira2, Edson Satoshi Gomi2, Jayme Augusto Rocha Vianna3, Renato Dichetti Dos Reis Lisboa4, Felipe Andrade Medeiros4, Vital Paulino Costa1.
Abstract
PURPOSE: To test the ability of machine learning classifiers (MLCs) using optical coherence tomography (OCT) and standard automated perimetry (SAP) parameters to discriminate between healthy and glaucomatous individuals, and to compare it to the diagnostic ability of the combined structure-function index (CSFI), general ophthalmologists and glaucoma specialists.Entities:
Mesh:
Year: 2018 PMID: 30517157 PMCID: PMC6281287 DOI: 10.1371/journal.pone.0207784
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographics and clinical characteristics of the study population.
| Healthy (N = 66) | Glaucoma (N = 58) | P value | |
|---|---|---|---|
| Age (years), median (IQR) | 55 (51–61.8) | 60 (54–62) | 0.077 |
| Left eye, no. (%) | 33 (50.0) | 28 (48.3) | 0.859 |
| Female gender, no. (%) | 41 (62.1) | 28 (48.3) | 0.148 |
| Ethnicity (White; Black; Mixed; Asian), no. (%) | 39 (59.1); 14 (21.2); 12 (18.2); 1 (1.5) | 20 (34.5); 21 (24.5); 17 (29.3); 0 | 0.030 |
| VA (logMAR), median (IQR) | 0 (0) | 0.05 (0–0.1) | 0.001 |
| SE (D), median (IQR) | 0.25 (-0.25 to + 0.75) | 0.25 (-0.25 to +1.5) | 0.180 |
| IOP (mmHg), median (IQR) | 13.0 (11–14) | 13.5 (12–14.8) | 0.062 |
| Medications, median (IQR) | 0 | 3 (2–4) | <0.001 |
| SAP MD (dB), median (IQR) | -0.65 (-1.6 to 0) | -3.44 (-6.0 to -2.4) | <0.001 |
| SAP PSD (dB), median (IQR) | 1.84 (1.5–2.2) | 4.31 (2.8–6.0) | <0.001 |
| FDT MD (dB), median (IQR) | -0.50 (-1.2 to 0.4) | -3.27 (-5.0 to -1.9) | <0.001 |
| FDT PSD (dB), median (IQR) | 3.87 (3.2–4.3) | 5.41 (4.6–6.9) | <0.001 |
| SAP | 1151 (1045–1263) | 857 (688–944) | <0.001 |
| OCT | 939 (845–1071) | 589 (484–746) | <0.001 |
| WRGC (x1000 cells), median (IQR) | 939 (855–1070) | 622 (536–753) | <0.001 |
| CSFI (%), median (IQR) | 4.5 (-4.1 to 15.4) | 36.9 (27.4 to 44.8) | <0.001 |
| Glaucoma specialist likelihood scale, median (IQR) | 4 (3–5.8) | 13.5 (9.3–15) | <0.001 |
| General ophthalmologist likelihood scale, median (IQR) | 4 (4–8) | 12 (9–14) | <0.001 |
IQR = interquartile range; VA = visual acuity; SE = spherical equivalent; D = diopters; dB = decibels; SAP = standard automated perimetry; FDT = frequency doubling technology; MD = mean deviation; PSD = pattern standard deviation; SAPrgc = SAP-derived estimate of total number of retinal ganglion cells; WRGC = weighted number of retinal ganglion cells based on OCT and SAP measurements; OCTrgc = OCT-derived estimate of total number of retinal ganglion cells; CSFI = combined structure-function index.
Areas under ROC curve (AUC) and sensitivities (%) at fixed specificities of 80% and 90% obtained with SD-OCT and SAP data using MLCs, CSFI, glaucoma specialists and general ophthalmologists.
| AUC | Sensitivity at 90% specificity | Sensitivity at 80% specificity | |
|---|---|---|---|
| ADA | 0.874 | 76.9% | 82.7% |
| BAG | 0.871 | 82.8% | 93.1% |
| CTree | 0.805 | 51.6% | 77.8% |
| ENS | 0.853 | 76.0% | 83.8% |
| MLP | 0.895 | 82.8% | 93.1% |
| NB | 0.923 | 81.0% | 86.2% |
| RAN | 0.910 | 81.0% | 87.9% |
| RBF | 0.931 | 75.9% | 90.0% |
| SVML | 0.913 | 80.3% | 84.8% |
| SVMG | 0.924 | 82.8% | 89.7% |
| CSFI | 0.948 | 79.3% | 91.4% |
| Glaucoma Specialists | 0.921 | 83.8% | 87.2% |
| General Ophthalmologists | 0.879 | 66.2% | 81.2% |
Abbreviations: ADA, Ada Boost M1; BAG, Bagging; CTREE, Classification Tree; ENS, Ensemble Selection; MLP, Multilayer Perceptron; NB, Naive-Bayes; RBF, Radial Basis Function Network; RAN, Random Forest; SVML, Support Vector Machine Linear; SVGM, Support Vector Machine Gaussian; CSFI, Combined Structure-Function Index.
Fig 1ROC Curves of the best MLC (RBF), CSFI, general ophthalmologists and glaucoma specialists.
Comparison of AUCs obtained with RBF, CSFI, general ophthalmologists and glaucoma specialists (P values).
| CSFI | Glaucoma Specialists | General Ophthalmologist | |
| MLC (RBF Network) | 0.309 | 0.648 | 0.046 |
| CSFI | -- | 0.254 | 0.007 |
| Glaucoma Specialist | -- | -- | 0.030 |
Abbreviations: MLC, Machine Learning Classifier; RBF Network, Radial Basis Function Network; CSFI, Combined Structure-Function Index.