| Literature DB >> 30424135 |
Donny Nugraha Mazaafrianto1, Masatoshi Maeki2, Akihiko Ishida3, Hirofumi Tani4, Manabu Tokeshi5,6,7,8.
Abstract
Since the systematic evolution of ligands by exponential enrichment (SELEX) method was developed, aptamers have made significant contributions as bio-recognition sensors. Microdevice systems allow for low reagent consumption, high-throughput of samples, and disposability. Due to these advantages, there has been an increasing demand to develop microfluidic-based aptasensors for analytical technique applications. This review introduces the principal concepts of aptasensors and then presents some advanced applications of microdevice-based aptasensors on several platforms. Highly sensitive detection techniques, such as electrochemical and optical detection, have been integrated into lab-on-a-chip devices and researchers have moved towards the goal of establishing point-of-care diagnoses for target analyses.Entities:
Keywords: SELEX; aptamer; biosensor; lab-on-chip; microdevice; point-of-care
Year: 2018 PMID: 30424135 PMCID: PMC6187364 DOI: 10.3390/mi9050202
Source DB: PubMed Journal: Micromachines (Basel) ISSN: 2072-666X Impact factor: 2.891
Figure 1Schematic illustration of microdevice-based aptamer sensor with various platforms, detection methods and application to actual samples.
Figure 2Schematic of microfluidic SELEX device which integrates selection and amplification steps. (a) Polydimethylsiloxane (PDMS) channel on glass substrate; (b) Top view with detailed features; (c) Selection and amplification microchamber connected by a single serpentine shaped microchannel. Reproduced with permission from reference [17]. Copyright 2017 Electrochemical Society.
Figure 3Bi-loop spiral design of inertial microfluidic SELEX (I-SELEX) with dual inlets and outlets. (a) The unbound oligonucleotide/any particles migrate towards the outer-side wall (blue color) and are separated with the desired target; (b) Numbers 1–5 represent cross sections inside the channel. Fluorescence-labeled aptamer was used to identify each position. Reproduced with permission from reference [19]. Copyright 2015 Macmillan.
Figure 4A representative chaotic mixer microfluidic device combined with an aptamer cocktail-grafted silicon nanowire substrate (SiNS). The different aptamers work synergistically to enhance capture affinity in a low-concentration target. Reproduced with permission from reference [68]. Copyright 2016 John Wiley and Son.
Figure 5Integrated microfluidic chip system using a sandwich aptamer. (a) The device was composed of PDMS structures (air control layer & liquid chamber layer) and a glass substrate; (b) Schematic ilustration of experimental procedure performed on the integrated microfluidic chip system. Reproduced with permission from reference [47]. Copyright 2016 Elsevier. (c) The configuration of the inlet-outlet, chambers, micromixers, and microvalve. Reproduced with permission from reference [46]. Copyright 2016 Elsevier.
Figure 6Paper-based analytical device aptasensor. (a) Rubik’s cube-based µPAD aptasensor to generate a hydrophobic barrier and a testing zone. Parts 1–5 have different functions while the 6th part acts as a “bare” or support part only. Reproduced with permission from reference [78]. Copyright 2017 Elsevier; (b) Lateral strip test for specific detection of vaspin. This device was equipped with a control as indicator. Reproduced with permission from reference [82]. Copyright 2017 Elsevier.
Figure 7Fabrication steps of the carbon nanowire aptasensor. (a) The device was fabricated by integrating electrospinning and photolithography with carbon-microelectromechanical system (C-MEMS) technique; (b) Electrospun SU-8 nanowire; (c) Single SU-8 nanowire after photolithography and development; (d) Microfluidic platform containing the nanowire sensor. Reproduced with permission from reference [72]. Copyright 2018 Elsevier.
Figure 8Schematic illustration of “signal-on” aptasensor based on MWCNT and fluorescence-labeled aptamer. Reproduced with permission from reference [92]. Copyright 2017 Springer.
Figure 9Microfluidic Aptamer-Tethered Enzyme Capture (APTEC) biosensor. (a) The reaction scheme of the reagents and redox reaction that results in the generation of an insoluble purple diformazan dye. There was a color difference between positive and negative samples; (b) The smartphone camera was used for capturing images in a telemedicine application. Reproduced with permission from reference [97]. Copyright 2018 Elsevier.
Figure 10(a) Specific aptamer to form a microparticle−aptamer−target complex; the unbound particles remained in a free condition; (b) Separation process of the mixture solution through an acoustofluidic device. Reproduced with permission from reference [100]. Copyright 2017 American Chemical Society.
Summary of microdevice-based aptasensors on several platforms and target analytes.
| Detection Method | Substrate | Aptamer | Target | Matrix Sample | LOD or Linear Range | Device Features | Reference |
|---|---|---|---|---|---|---|---|
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| Chronoamperometry | Glass | Peptide | Thrombin | - | 10 fg·mL−1 to 1 μg·mL−1 | Plasma-functionalized SWCNT | [ |
| DPV | PDMS | Biotin-Aptamer-Ferrocene | Norovirus | Bovine Blood | 100 pM | Integrated PDMS-SPCE | [ |
| SWV | Glass | Competitive aptamer | Cortisol | Saliva glucocorticoids in serum | 10 pg·mL−1
| Sample volume (<1 μL) | [ |
| SWV | Glass | MB-labeled Aptamer | TGF-β1 | Human hepatic stellate cell | 1 ppb | PDMS layer with microcup | [ |
| Digital multimeter | Chromatography paper | - | Adenosine | - | 11.8 µM | Origami paper device | [ |
| DPV | Paper | Peptide | Renin | - | 300 ng·mL−1 | DEP (disposable electrochemical printed) | [ |
| EIS | Poly-imide film | - | Bisphenol A (BPA) | Food (canned) | 152.93 aM | Printed circuit board material | [ |
| EIS | Glass | - | Avian Influenza Virus | Virus culture | 0.0128 hemagglutinin units (HAU) | Interdigitated electrode | [ |
| Resistance | Si-Wafer | Amine-functionalized aptamer | Salmonella typhimurium | Fresh beef | 10 CFU·mL−1 | Carbon nanowire sensors C-MEMS | [ |
| EIS | Glass | - | Tetracycline | Milk | 1 pM | Multi-walled carbon nanotubes | [ |
| Photoelectrochemical | Indium Tin Oxide (ITO) | S6 aptamer | SK-BR-3 | - | 58 cell·mL−1 | ITO-based SPEs device | [ |
| EIS | Cyclic olefin copolymer | Short strand aptamer | Ampicillin | UHT low fatm milk | 10 pM | PEDOT-OH:TsO | [ |
| Detection Method | Substrate | Aptamer | Target | Matrix Sample | LOD or Linear Range | Device Features | Reference |
| EIS | Glass | Sgc8 | CCRF-CEM | T-cell acute lymphoblastic leukemia (ALL) | - | Logic aptamer sensor (LAS) | [ |
|
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| Fluorescence | Glass | Aptamer-antibody sandwich | Cancer stem-like cells | - | - | Cell-SELEX | [ |
| Fluorescence | Glass | Aptamer sandwich with magnetic beads | Human immunoglobulin A (IgA) | Random oligonucleotides | - | Microfludic SELEX | [ |
| Fluorescence | Glass | - | Malaria parasite | Red blood cells | - | I-SELEX | [ |
| Fluorescence | Glass | - | - | Mixed cells | - | Cell-SELEX | [ |
| Fluorescence | PDMS | Hair pin aptamer | Protein tyrosine kinase-7 | Cell culture | 0.4 nM | Laser-induced fluorescence detector (LIFD) | [ |
| Fluorescence | Glass | FAM-aptamer | Carcinoembryonic antigen (CEA) | Human serum | 68 ng·mL−1 | Micro chip electrophoresis (MCE) | [ |
| Fluorescence | Glass | Cy3-aptamer | Thrombin | Human serum | 0.4 fM | Avidin-biotin interaction | [ |
| Fluorescence | Glass | Photoluminescent GOQD-aptamer | Lead ion (Pb2+) | Drinking water | 0.64 nM | Packed with cation exchange resins | [ |
| Fluorescence | Glass | G-quadruplex | VEGF-165 protein | DMEM cell media | 0.17 pM | Label-free | [ |
| Fluorescence | Glass | FAM-aptamer universal | Influenza virus | Random oligonucleotides | 3.2 HAU | Automatic process | [ |
| Fluorescence | Glass | FAM-aptamer sandwich | Influenza A (InfA/H1N1) | 0.032 HAU | Magnet external | [ | |
| Fluorescence | Glass | Fluorescence-labeled | 17β-estradiol | Estradiol solution | 0.07 pM | Microfluidic droplet | [ |
| Fluorescence | Glass | G-quadruplex structure | Ochratoxin A | - | - | Fluorescence polarization | [ |
| Fluorescence | Glass | Multivalent DNA aptamer nanospheres | Human acute leukemia cells | Human blood | - | Flow cytometry analysis | [ |
| Detection Method | Substrate | Aptamer | Target | Matrix Sample | LOD or Linear Range | Device Features | Reference |
| Fluorescence | Glass | FAM-aptamer | Thrombin | - | - | FRET | [ |
| Fluorescence | Glass | FAM-aptamer | Thrombin | - | - | FRET | [ |
| Fluorescence | Glass | Sandwich aptamer FITC | Glycated hemoglobins (HbA1c) & Total hemoglobin (Hb) | Blood | - | Automated microfluidic system | [ |
| Fluorescence | Glass | Sandwich aptamer | Thrombin | - | 27 pM | Gold nanohole array | [ |
| Fluorescence | Glass | Aptamer functionalize QD | Lysozyme, OA, Brevetoxin, ß-conglutin lupine | Fresh egg white | Lysozyme (343 ppb); OA (0.4 ppb); Brevetoxin (0.56 ppb); ß-cl(2.5 ppb) | Quantum Dots (QD) | [ |
| Fluorescence | Si-nanowire | Cocktail aptamer | Non-small cell lung cancer | Blood | - | PDMS chaotic mixer | [ |
| Fluorescence | Glass | FAM-aptamer | ss-DNA | - | - | Isolating ssDNA from dsDNA | [ |
| Fluorescence | Chromatography paper | Aptamer-functionalized GO | Staphylococcus aureus | Buffer (Bacterial colonies) | 11.0 CFU·mL−1 | PDMS/paper/glass microfludic device | [ |
| Fluorescence | Paper | - | Cancer cells | Cell culture | MCF-7: 6270 cell·mL−1 | Mesoporous silica nanoparticles (MSNs) | [ |
| Fluorescence | Paper | FAM-aptamer | Norovirus | Spiked mussel sample | MWCNT: 4.4 ng·mL−1 | Multi-walled carbon nanotubes | [ |
| Fluorescence | Printed circuit board (PCB) | - | Cocaine Adenosine | Human blood serum | Cocaine: 0.1 pM | MECAS-chip | [ |
| Fluorescence | Glass | FAM-aptamer | Lysozyme | - | - | Electrophoresis frontal mode | [ |
| Fluorescence | - | Amine-aptamer | Tetrodotoxin (TTX) | Human blood | 0.06 ng·mL−1 | Marine toxin | [ |
| Detection Method | Substrate | Aptamer | Target | Matrix Sample | LOD or Linear Range | Device Features | Reference |
|
| |||||||
| Colorimetry | Glass | Sandwich aptamer | Thrombin | - | 20 pM | Naked-eye & Flatbed detection | [ |
| Colorimetry | Si-wafer | G-quadruplex structure | Thrombin | Human blood | 0.083 pg·mL−1 | Rolling circle amplification | [ |
| Colorimetry | Paper | Cross-linking aptamer | Cocaine | Urine | 7.3 µM | Utilizes ImageJ software | [ |
| Colorimetry | Paper | Hybridization chain reaction | Adenosine | Human serum | 1.5 µM | Naked eyes detection | [ |
| Colorimetry | Paper | Aptamer attached microbeads | Adenosine | Urine | - | Rubik’s cube stamp | [ |
| Colorimetry | Paper | Sandwich aptamer | Vaspin | Buffer & serum | Buffer: 0.137 nM | Lateral strip assay | [ |
| Colorimetry | Paper | Biotin modified aptamer | Culture E.coli | 10 CFU·mL−1 | Lateral strip assay | [ | |
| Colorimetry | Paper | Competitive aptamer | Ochratoxin A | - | 1 ppb | Lateral strip assay | [ |
| Colorimetry | Clear resin | Biotinylated aptamer | PfLDH enzyme | Human blood serum | 0.01% | Telemedicine | [ |
| Colorimetry | Paper | Hydrogel-aptamer | Cocaine | Urine | - | Naked-eye detection | [ |
|
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| Surface Plasmon Resonance | Hairpin RNA aptamer | Aptamer candidate | Random library | KD = 8 nM | SPR-SELEX | [ | |
| Surface Acoustic Wave | PDMS | Polystyrene aptamer conjugate | Thrombin | Buffer | - | Acoustic wave driven | [ |
| Surface Acoustic Wave | LiTaO3 substrate with SiO2 film | Aptamer beacon | Prostate specific antigen (PSA) | - | PSA = 10 ppb | Interdigitated transducer | [ |
| Chemiluminescence | PDMS | Aptamer-antibody sandwich | free prostate specific antigen (fPSA) | Human semen | 0.5 ng·mL−1 | Performed in parallel | [ |
| Chemiluminescence | PDMS | Thiolated aptamer | Lysozyme | Human serum | 44.6 fM | Droplet microfluidic | [ |
| Detection Method | Substrate | Aptamer | Target | Matrix Sample | LOD or Linear Range | Device Features | Reference |
| Chemiluminescence | Glass | Aptamer-antibody sandwich | HbA1c | Blood | 0.65 g·dL−1 | Three-layer chips | [ |
| Chemiluminescence | Glass | - | Ochratoxin A | Beer | 0.82 mg·L−1 | Polymer brush | [ |
| Electrochemiluminescence | Paper | Sandwich aptamer | ATP | - | 0.1 pM | Origami design | [ |