| Literature DB >> 28058132 |
Rui-Yun Tian1, Chao Lin2, Shi-Yu Yu3, Sheng Gong1, Pan Hu1, Yan-Song Li1, Zong-Cheng Wu1, Yang Gao1, Yu Zhou1, Zeng-Shan Liu1, Hong-Lin Ren1, Shi-Ying Lu1.
Abstract
The existing assays for detecting brevetoxin (BTX) depend on expensive equipment with a professional operator or on an antibody with limited stability, which requires complex processes, a high cost, and a considerable amount of time. The development of an alternative detection probe is another promising research direction. This paper reports the use of aptamers binding to BTX-2 in an analytical assay using the systematic evolution of ligands by exponential enrichment (SELEX). After 12 rounds of selection, the secondary structures of 25 sequences were predicted. Compared to other aptamers, Bap5 has relatively high affinity with the lowest dissociation constant of 4.83 μM, and IC50 is 73.81 ng mL-1. A good linear regression formula of y = 30.688x - 7.329 with a coefficient correlation of R2 = 0.9798 was obtained using a biotin-avidin ELISA. Moreover, there is no cross-reaction with the detected marine toxins, except for BTX-2. Thus, Bap5 has potential to detect BTX-2 in shellfish in the future as a substitute for the recognition probe.Entities:
Year: 2016 PMID: 28058132 PMCID: PMC5183765 DOI: 10.1155/2016/9241860
Source DB: PubMed Journal: J Anal Methods Chem ISSN: 2090-8873 Impact factor: 2.193
Scheme 1Schematic representation of the SELEX process used to select the aptamer.
Figure 1Identification of dsDNA and ssDNA using electrophoresis. (a) 2% sepharose gel electrophoresis of the 85-bp dsDNA amplified by symmetric PCR. Lane 1 is the 85-bp dsDNA, and lane 2 is the DL2000 DNA Marker; (b) 8% denaturing urea gel electrophoresis of ssDNA. Lane 1 is the DL2000 DNA Marker, and lane 2 is the 85-nt ssDNA amplified by asymmetric PCR.
Figure 2Binding of the ssDNA library to BTX-2-BSA during the 12 SELEX rounds.
Figure 3Secondary structures of the candidate aptamers predicted by Mfold.
Figure 4Binding activity and cross-reactivity of Bap5. (a) The Kd value of the Bap5 aptamer was measured using different BTX-2-OVA coating concentrations (1, 0.5, and 0.25 μg mL−1) to estimate the dissociation constant (Kd = 1/Ka = (n[Ap′]t − [Ap]t)/(n − 1)). The x-axis represents the aptamer concentration (ng mL−1), whereas the y-axis represents the absorbance at 492 nm. (b) Plots from the ELISA experiments used to investigate the specificity of the Bap5 aptamer for BTX-2 and other toxins. The calibration curve was obtained with the inhibition percent [(N − S)/N × 100%] shown on the y-axis and the concentration of toxins on the x-axis. N is the OD492 value when the toxin standard is not present in the detected sample (control), and S is the OD492 value when there is a difference in the concentration of the standard in the detected sample. All the data represent the means ± SD (n = 3) of three replicates.
Figure 5Plot of the indirect competitive ELISA of the BTX-2 aptamer Bap5. The calibration curve was obtained with the inhibition percent [(N − S)/N × 100%] on the y-axis and the log concentration of BTX-2 on the x-axis. The N and S values were the OD492 of the control and the sample, respectively. As the concentration of the BTX-2 standard increased (ranging from 3.125 to 200 ng mL−1), the inhibition ratio ranged from 11.67% to 67.3%.