Literature DB >> 29094731

Microfluidic methods for aptamer selection and characterization.

Sean K Dembowski1, Michael T Bowser.   

Abstract

Nucleic acid aptamers have tremendous potential as molecular recognition elements in biomedical targeting, analytical arrays, and self-signaling sensors. However, practical limitations and inefficiencies in the process of selecting novel aptamers (SELEX) have hampered widespread adoption of aptamer technologies. Many factors have recently contributed to more effective aptamer screening, but no influence has done more to increase the efficiency, scale, and automation of aptamer selection than that of new microfluidic SELEX techniques. This review introduces aptamers as a powerful chemical and biological tool, briefly highlights traditional SELEX techniques and their limitations, covers in detail the recent advancements in microfluidic methods of aptamer selection and characterization, and suggests possible future directions of the field.

Entities:  

Year:  2017        PMID: 29094731      PMCID: PMC5819361          DOI: 10.1039/c7an01046j

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  89 in total

1.  Structure-switching signaling aptamers.

Authors:  Razvan Nutiu; Yingfu Li
Journal:  J Am Chem Soc       Date:  2003-04-23       Impact factor: 15.419

2.  Sol-gel derived nanoporous compositions for entrapping small molecules and their outlook toward aptamer screening.

Authors:  Ji-Young Ahn; SangWook Lee; Minjoung Jo; Jeehye Kang; Eunkyung Kim; Ok Chan Jeong; Thomas Laurell; Soyoun Kim
Journal:  Anal Chem       Date:  2012-02-27       Impact factor: 6.986

3.  Nonequilibrium capillary electrophoresis of equilibrium mixtures: a universal tool for development of aptamers.

Authors:  Maxim Berezovski; Andrei Drabovich; Svetlana M Krylova; Michael Musheev; Victor Okhonin; Alexander Petrov; Sergey N Krylov
Journal:  J Am Chem Soc       Date:  2005-03-09       Impact factor: 15.419

4.  Selection and elution of aptamers using nanoporous sol-gel arrays with integrated microheaters.

Authors:  Seung-Min Park; Ji-Young Ahn; Minjoung Jo; Dong-Ki Lee; John T Lis; Harold G Craighead; Soyoun Kim
Journal:  Lab Chip       Date:  2009-02-13       Impact factor: 6.799

5.  Selection of cholesterol esterase aptamers using a dual-partitioning approach.

Authors:  Jon Ashley; Kaili Ji; Sam F Y Li
Journal:  Electrophoresis       Date:  2015-08-14       Impact factor: 3.535

6.  Cell type-specific delivery of siRNAs with aptamer-siRNA chimeras.

Authors:  James O McNamara; Eran R Andrechek; Yong Wang; Kristi D Viles; Rachel E Rempel; Eli Gilboa; Bruce A Sullenger; Paloma H Giangrande
Journal:  Nat Biotechnol       Date:  2006-06-25       Impact factor: 54.908

7.  Capillary electrophoresis-SELEX selection of catalytic DNA aptamers for a small-molecule porphyrin target.

Authors:  Jing Yang; Michael T Bowser
Journal:  Anal Chem       Date:  2013-01-14       Impact factor: 6.986

8.  Identification and characterization of nuclease-stabilized RNA molecules that bind human prostate cancer cells via the prostate-specific membrane antigen.

Authors:  Shawn E Lupold; Brian J Hicke; Yun Lin; Donald S Coffey
Journal:  Cancer Res       Date:  2002-07-15       Impact factor: 12.701

9.  Acousto-microfluidics for screening of ssDNA aptamer.

Authors:  Jee-Woong Park; Su Jin Lee; Shuo Ren; Sangwook Lee; Soyoun Kim; Thomas Laurell
Journal:  Sci Rep       Date:  2016-06-08       Impact factor: 4.379

10.  Screening and improvement of an anti-VEGF DNA aptamer.

Authors:  Yoshihiko Nonaka; Koji Sode; Kazunori Ikebukuro
Journal:  Molecules       Date:  2010-01-07       Impact factor: 4.411

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  6 in total

1.  Generation and Selection of Specific Aptamers Targeting Brucella Species through an Enhanced Cell-SELEX Methodology.

Authors:  Dalia M El-Husseini; Ashraf E Sayour; Falk Melzer; Magda F Mohamed; Heinrich Neubauer; Reham H Tammam
Journal:  Int J Mol Sci       Date:  2022-05-30       Impact factor: 6.208

Review 2.  Electrochemical Aptasensors for Antibiotics Detection: Recent Achievements and Applications for Monitoring Food Safety.

Authors:  Gennady Evtugyn; Anna Porfireva; George Tsekenis; Veronika Oravczova; Tibor Hianik
Journal:  Sensors (Basel)       Date:  2022-05-12       Impact factor: 3.847

3.  Refining the Results of a Classical SELEX Experiment by Expanding the Sequence Data Set of an Aptamer Pool Selected for Protein A.

Authors:  Regina Stoltenburg; Beate Strehlitz
Journal:  Int J Mol Sci       Date:  2018-02-24       Impact factor: 5.923

4.  Poly-Target Selection Identifies Broad-Spectrum RNA Aptamers.

Authors:  Khalid K Alam; Jonathan L Chang; Margaret J Lange; Phuong D M Nguyen; Andrew W Sawyer; Donald H Burke
Journal:  Mol Ther Nucleic Acids       Date:  2018-10-24       Impact factor: 8.886

Review 5.  Recent Microdevice-Based Aptamer Sensors.

Authors:  Donny Nugraha Mazaafrianto; Masatoshi Maeki; Akihiko Ishida; Hirofumi Tani; Manabu Tokeshi
Journal:  Micromachines (Basel)       Date:  2018-04-25       Impact factor: 2.891

Review 6.  Evidence for and against Liquid-Liquid Phase Separation in the Nucleus.

Authors:  Peng A; Stephanie C Weber
Journal:  Noncoding RNA       Date:  2019-11-01
  6 in total

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