Literature DB >> 30078725

Active N6-Methyladenine Demethylation by DMAD Regulates Gene Expression by Coordinating with Polycomb Protein in Neurons.

Bing Yao1, Yujing Li2, Zhiqin Wang2, Li Chen3, Mickael Poidevin2, Can Zhang4, Li Lin2, Feng Wang2, Han Bao2, Bin Jiao2, Junghwa Lim2, Ying Cheng2, Luoxiu Huang2, Brittany Lynn Phillips5, Tianlei Xu6, Ranhui Duan7, Kenneth H Moberg4, Hao Wu6, Peng Jin8.   

Abstract

A ten-eleven translocation (TET) ortholog exists as a DNA N6-methyladenine (6mA) demethylase (DMAD) in Drosophila. However, the molecular roles of 6mA and DMAD remain unexplored. Through genome-wide 6mA and transcriptome profiling in Drosophila brains and neuronal cells, we found that 6mA may epigenetically regulate a group of genes involved in neurodevelopment and neuronal functions. Mechanistically, DMAD interacts with the Trithorax-related complex protein Wds to maintain active transcription by dynamically demethylating intragenic 6mA. Accumulation of 6mA by depleting DMAD coordinates with Polycomb proteins and contributes to transcriptional repression of these genes. Our findings suggest that active 6mA demethylation by DMAD plays essential roles in fly CNS by orchestrating through added epigenetic mechanisms.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  6-methyladenine; Polycomb; epigenetics; neuron

Mesh:

Substances:

Year:  2018        PMID: 30078725      PMCID: PMC6136845          DOI: 10.1016/j.molcel.2018.07.005

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  42 in total

1.  DNA methylation in Drosophila melanogaster.

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Journal:  Nature       Date:  2000-11-30       Impact factor: 49.962

Review 2.  Epigenetic choreographers of neurogenesis in the adult mammalian brain.

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3.  The mysterious presence of a 5-methylcytosine oxidase in the Drosophila genome: possible explanations.

Authors:  Thomas L Dunwell; Liam J McGuffin; Jim M Dunwell; Gerd P Pfeifer
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Authors:  Ye Fu; Guan-Zheng Luo; Kai Chen; Xin Deng; Miao Yu; Dali Han; Ziyang Hao; Jianzhao Liu; Xingyu Lu; Louis C Dore; Xiaocheng Weng; Quanjiang Ji; Laurens Mets; Chuan He
Journal:  Cell       Date:  2015-04-30       Impact factor: 41.582

5.  N6-methyladenine DNA modification in Drosophila.

Authors:  Guoqiang Zhang; Hua Huang; Di Liu; Ying Cheng; Xiaoling Liu; Wenxin Zhang; Ruichuan Yin; Dapeng Zhang; Peng Zhang; Jianzhao Liu; Chaoyi Li; Baodong Liu; Yuewan Luo; Yuanxiang Zhu; Ning Zhang; Shunmin He; Chuan He; Hailin Wang; Dahua Chen
Journal:  Cell       Date:  2015-04-30       Impact factor: 41.582

6.  The ecdysone receptor coactivator Taiman links Yorkie to transcriptional control of germline stem cell factors in somatic tissue.

Authors:  Can Zhang; Brian S Robinson; Wenjian Xu; Liu Yang; Bing Yao; Heya Zhao; Phil K Byun; Peng Jin; Alexey Veraksa; Kenneth H Moberg
Journal:  Dev Cell       Date:  2015-07-02       Impact factor: 12.270

7.  Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4.

Authors:  Hans-Martin Herz; Man Mohan; Alexander S Garruss; Kaiwei Liang; Yoh-Hei Takahashi; Kristen Mickey; Olaf Voets; C Peter Verrijzer; Ali Shilatifard
Journal:  Genes Dev       Date:  2012-11-19       Impact factor: 11.361

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Authors:  Feng Tie; Rakhee Banerjee; Chen Fu; Carl A Stratton; Ming Fang; Peter J Harte
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-22       Impact factor: 11.205

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Journal:  Science       Date:  2016-01-15       Impact factor: 47.728

10.  DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing.

Authors:  Kaifu Chen; Yuanxin Xi; Xuewen Pan; Zhaoyu Li; Klaus Kaestner; Jessica Tyler; Sharon Dent; Xiangwei He; Wei Li
Journal:  Genome Res       Date:  2012-11-28       Impact factor: 9.043

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  23 in total

Review 1.  Diverse and dynamic DNA modifications in brain and diseases.

Authors:  Matthew J Armstrong; Yulin Jin; Emily G Allen; Peng Jin
Journal:  Hum Mol Genet       Date:  2019-11-21       Impact factor: 6.150

2.  Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization.

Authors:  Leslie Y Beh; Galia T Debelouchina; Derek M Clay; Robert E Thompson; Kelsi A Lindblad; Elizabeth R Hutton; John R Bracht; Robert P Sebra; Tom W Muir; Laura F Landweber
Journal:  Cell       Date:  2019-05-16       Impact factor: 41.582

Review 3.  N(6)-Methyladenine in eukaryotes.

Authors:  Myles H Alderman; Andrew Z Xiao
Journal:  Cell Mol Life Sci       Date:  2019-05-29       Impact factor: 9.261

Review 4.  DNA N6-methyldeoxyadenosine in mammals and human disease.

Authors:  Chao Shen; Kitty Wang; Xiaolan Deng; Jianjun Chen
Journal:  Trends Genet       Date:  2022-01-03       Impact factor: 11.639

5.  A fungal dioxygenase CcTet serves as a eukaryotic 6mA demethylase on duplex DNA.

Authors:  Yajuan Mu; Lin Zhang; Jingyan Hu; Jiashen Zhou; Hou-Wen Lin; Chuan He; Hong-Zhuan Chen; Liang Zhang
Journal:  Nat Chem Biol       Date:  2022-06-02       Impact factor: 16.174

6.  Ten-eleven translocation proteins and their role beyond DNA demethylation - what we can learn from the fly.

Authors:  Joy N Ismail; Mirna Ghannam; Amani Al Outa; Felice Frey; Margret Shirinian
Journal:  Epigenetics       Date:  2020-05-18       Impact factor: 4.528

7.  N6-Methyladenine in Eukaryotic DNA: Tissue Distribution, Early Embryo Development, and Neuronal Toxicity.

Authors:  Sara B Fernandes; Nathalie Grova; Sarah Roth; Radu Corneliu Duca; Lode Godderis; Pauline Guebels; Sophie B Mériaux; Andrew I Lumley; Pascaline Bouillaud-Kremarik; Isabelle Ernens; Yvan Devaux; Henri Schroeder; Jonathan D Turner
Journal:  Front Genet       Date:  2021-05-24       Impact factor: 4.599

Review 8.  Brain on food: The neuroepigenetics of nutrition.

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Journal:  Neurochem Int       Date:  2021-06-13       Impact factor: 4.297

9.  Drosophila Tet Is Required for Maintaining Glial Homeostasis in Developing and Adult Fly Brains.

Authors:  Felice Frey; Jawdat Sandakly; Mirna Ghannam; Caren Doueiry; Fredrik Hugosson; Johannes Berlandi; Joy N Ismail; Tenzin Gayden; Martin Hasselblatt; Nada Jabado; Margret Shirinian
Journal:  eNeuro       Date:  2022-04-26

Review 10.  Dynamics of DNA Methylation and Its Functions in Plant Growth and Development.

Authors:  Suresh Kumar; Trilochan Mohapatra
Journal:  Front Plant Sci       Date:  2021-05-21       Impact factor: 5.753

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