Literature DB >> 34991904

DNA N6-methyldeoxyadenosine in mammals and human disease.

Chao Shen1, Kitty Wang1, Xiaolan Deng2, Jianjun Chen3.   

Abstract

N6-methyladenine (6mA) is the most prevalent DNA modification in prokaryotes. However, its presence and significance in eukaryotes remain elusive. Recently, with methodology advances in detection and sequencing of 6mA in eukaryotes, 6mA is back in the spotlight. Although multiple studies have reported that 6mA is an important epigenetic mark in eukaryotes and plays a regulatory role in DNA transcription, transposon activation, stress response, and other bioprocesses, there are some discrepancies in the current literature. We review the recent advances in 6mA research in eukaryotes, especially in mammals. In particular, we describe the abundance/distribution of 6mA, its potential role in regulating gene expression, identified regulators, and pathological roles in human diseases, especially in cancer. The limitations faced by the field and future perspectives in 6mA research are also discussed.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  ALKBH1; DNA 6mA; METTL4; adenine methylation; m6dA

Mesh:

Substances:

Year:  2022        PMID: 34991904      PMCID: PMC9007851          DOI: 10.1016/j.tig.2021.12.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  62 in total

1.  Identification and analysis of adenine N6-methylation sites in the rice genome.

Authors:  Chao Zhou; Changshi Wang; Hongbo Liu; Qiangwei Zhou; Qian Liu; Yan Guo; Ting Peng; Jiaming Song; Jianwei Zhang; Lingling Chen; Yu Zhao; Zhixiong Zeng; Dao-Xiu Zhou
Journal:  Nat Plants       Date:  2018-07-30       Impact factor: 15.793

2.  Methylated bases in DNA from Paramecium aurelia.

Authors:  D J Cummings; A Tait; J M Goddard
Journal:  Biochim Biophys Acta       Date:  1974-11-20

3.  Widespread adenine N6-methylation of active genes in fungi.

Authors:  Stephen J Mondo; Richard O Dannebaum; Rita C Kuo; Katherine B Louie; Adam J Bewick; Kurt LaButti; Sajeet Haridas; Alan Kuo; Asaf Salamov; Steven R Ahrendt; Rebecca Lau; Benjamin P Bowen; Anna Lipzen; William Sullivan; Bill B Andreopoulos; Alicia Clum; Erika Lindquist; Christopher Daum; Trent R Northen; Govindarajan Kunde-Ramamoorthy; Robert J Schmitz; Andrii Gryganskyi; David Culley; Jon Magnuson; Timothy Y James; Michelle A O'Malley; Jason E Stajich; Joseph W Spatafora; Axel Visel; Igor V Grigoriev
Journal:  Nat Genet       Date:  2017-05-08       Impact factor: 38.330

4.  DNA N6-methyladenine increased in human esophageal squamous cell carcinoma.

Authors:  Luyang Chen; Meiying Zhang; Mingzhou Guo
Journal:  Discov Med       Date:  2020 Mar-Apr       Impact factor: 2.970

5.  DNA N6-methyladenine is dynamically regulated in the mouse brain following environmental stress.

Authors:  Bing Yao; Ying Cheng; Zhiqin Wang; Yujing Li; Li Chen; Luoxiu Huang; Wenxin Zhang; Dahua Chen; Hao Wu; Beisha Tang; Peng Jin
Journal:  Nat Commun       Date:  2017-10-24       Impact factor: 14.919

6.  Adenine Methylation in Drosophila Is Associated with the Tissue-Specific Expression of Developmental and Regulatory Genes.

Authors:  Kinnary Shah; Weihuan Cao; Christopher E Ellison
Journal:  G3 (Bethesda)       Date:  2019-06-05       Impact factor: 3.154

7.  Sources of artifact in measurements of 6mA and 4mC abundance in eukaryotic genomic DNA.

Authors:  Zach K O'Brown; Konstantinos Boulias; Jie Wang; Simon Yuan Wang; Natasha M O'Brown; Ziyang Hao; Hiroki Shibuya; Paul-Enguerrand Fady; Yang Shi; Chuan He; Sean G Megason; Tao Liu; Eric L Greer
Journal:  BMC Genomics       Date:  2019-06-03       Impact factor: 3.969

Review 8.  Adenine methylation in eukaryotes: Apprehending the complex evolutionary history and functional potential of an epigenetic modification.

Authors:  Lakshminarayan M Iyer; Dapeng Zhang; L Aravind
Journal:  Bioessays       Date:  2015-12-12       Impact factor: 4.345

9.  Human MettL3-MettL14 complex is a sequence-specific DNA adenine methyltransferase active on single-strand and unpaired DNA in vitro.

Authors:  Xing Zhang; Xiaodong Cheng; Clayton B Woodcock; Dan Yu; Taraneh Hajian; Jia Li; Yun Huang; Nan Dai; Ivan R Corrêa; Tao Wu; Masoud Vedadi
Journal:  Cell Discov       Date:  2019-12-24       Impact factor: 10.849

10.  N6-methyladenine in DNA antagonizes SATB1 in early development.

Authors:  Zheng Li; Shuai Zhao; Raman V Nelakanti; Kaixuan Lin; Tao P Wu; Myles H Alderman; Cheng Guo; Pengcheng Wang; Min Zhang; Wang Min; Zongliang Jiang; Yinsheng Wang; Haitao Li; Andrew Z Xiao
Journal:  Nature       Date:  2020-07-15       Impact factor: 49.962

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  3 in total

Review 1.  DNA N6-Methyladenine Modification in Eukaryotic Genome.

Authors:  Hao Li; Ning Zhang; Yuechen Wang; Siyuan Xia; Yating Zhu; Chen Xing; Xuefeng Tian; Yinan Du
Journal:  Front Genet       Date:  2022-06-24       Impact factor: 4.772

2.  N6-Methyladenosine Modification Patterns and Tumor Microenvironment Immune Characteristics Associated With Clinical Prognosis Analysis in Stomach Adenocarcinoma.

Authors:  Zhang Meijing; Luo Tianhang; Yang Biao
Journal:  Front Cell Dev Biol       Date:  2022-06-15

3.  Structural insights into molecular mechanism for N6-adenosine methylation by MT-A70 family methyltransferase METTL4.

Authors:  Qiang Luo; Jiezhen Mo; Hao Chen; Zetao Hu; Baihui Wang; Jiabing Wu; Ziyu Liang; Wenhao Xie; Kangxi Du; Maolin Peng; Yingping Li; Tianyang Li; Yangyi Zhang; Xiaoyan Shi; Wen-Hui Shen; Yang Shi; Aiwu Dong; Hailin Wang; Jinbiao Ma
Journal:  Nat Commun       Date:  2022-09-26       Impact factor: 17.694

  3 in total

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