Literature DB >> 32419604

Ten-eleven translocation proteins and their role beyond DNA demethylation - what we can learn from the fly.

Joy N Ismail1,2, Mirna Ghannam1,2, Amani Al Outa3, Felice Frey1,2, Margret Shirinian1,2.   

Abstract

Ten-eleven Translocation (TET) proteins have emerged as a family of epigenetic regulators that are important during development and have been implicated in various types of cancers. TET is a highly conserved protein that has orthologues in almost all multicellular organisms. Here, we review recent literature on the novel substrate specificity of this family of DNA 5-methylcytosine demethylases on DNA 6-methyladenine and RNA 5-methylcytosine that were first identified in the invertebrate model Drosophila. We focus on the biological role of these novel epigenetic marks in the fruit fly and mammals and highlight TET proteins' critical function during development specifically in brain development.

Entities:  

Keywords:  DNA demethylation; Drosophila; cancer biology; epigenetics; neuroscience

Year:  2020        PMID: 32419604      PMCID: PMC7595634          DOI: 10.1080/15592294.2020.1767323

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  57 in total

1.  N6-methyladenine DNA Modification in Glioblastoma.

Authors:  Qi Xie; Tao P Wu; Ryan C Gimple; Zheng Li; Briana C Prager; Qiulian Wu; Yang Yu; Pengcheng Wang; Yinsheng Wang; David U Gorkin; Cheng Zhang; Alexis V Dowiak; Kaixuan Lin; Chun Zeng; Yinghui Sui; Leo J Y Kim; Tyler E Miller; Li Jiang; Christine H Lee; Zhi Huang; Xiaoguang Fang; Kui Zhai; Stephen C Mack; Maike Sander; Shideng Bao; Amber E Kerstetter-Fogle; Andrew E Sloan; Andrew Z Xiao; Jeremy N Rich
Journal:  Cell       Date:  2018-11-01       Impact factor: 41.582

2.  N6-methyldeoxyadenosine marks active transcription start sites in Chlamydomonas.

Authors:  Ye Fu; Guan-Zheng Luo; Kai Chen; Xin Deng; Miao Yu; Dali Han; Ziyang Hao; Jianzhao Liu; Xingyu Lu; Louis C Dore; Xiaocheng Weng; Quanjiang Ji; Laurens Mets; Chuan He
Journal:  Cell       Date:  2015-04-30       Impact factor: 41.582

3.  Insights into the Biochemistry, Evolution, and Biotechnological Applications of the Ten-Eleven Translocation (TET) Enzymes.

Authors:  Mackenzie J Parker; Peter R Weigele; Lana Saleh
Journal:  Biochemistry       Date:  2019-01-10       Impact factor: 3.162

4.  Tet proteins connect the O-linked N-acetylglucosamine transferase Ogt to chromatin in embryonic stem cells.

Authors:  Pietro Vella; Andrea Scelfo; Sriganesh Jammula; Fulvio Chiacchiera; Kristine Williams; Alessandro Cuomo; Alessandra Roberto; Jesper Christensen; Tiziana Bonaldi; Kristian Helin; Diego Pasini
Journal:  Mol Cell       Date:  2013-01-24       Impact factor: 17.970

5.  DNA of Drosophila melanogaster contains 5-methylcytosine.

Authors:  H Gowher; O Leismann; A Jeltsch
Journal:  EMBO J       Date:  2000-12-15       Impact factor: 11.598

Review 6.  The AlkB Family of Fe(II)/α-Ketoglutarate-dependent Dioxygenases: Repairing Nucleic Acid Alkylation Damage and Beyond.

Authors:  Bogdan I Fedeles; Vipender Singh; James C Delaney; Deyu Li; John M Essigmann
Journal:  J Biol Chem       Date:  2015-07-07       Impact factor: 5.157

7.  Evolution of DNA Methylation across Insects.

Authors:  Adam J Bewick; Kevin J Vogel; Allen J Moore; Robert J Schmitz
Journal:  Mol Biol Evol       Date:  2017-03-01       Impact factor: 16.240

Review 8.  YTH Domain: A Family of N6-methyladenosine (m6A) Readers.

Authors:  Shanhui Liao; Hongbin Sun; Chao Xu
Journal:  Genomics Proteomics Bioinformatics       Date:  2018-04-30       Impact factor: 7.691

9.  Levels of DNA cytosine methylation in the Drosophila genome.

Authors:  Saniya Deshmukh; Vk Chaithanya Ponnaluri; Nan Dai; Sriharsa Pradhan; Deepti Deobagkar
Journal:  PeerJ       Date:  2018-07-02       Impact factor: 2.984

10.  Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species.

Authors:  Floriana Capuano; Michael Mülleder; Robert Kok; Henk J Blom; Markus Ralser
Journal:  Anal Chem       Date:  2014-03-25       Impact factor: 6.986

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  2 in total

1.  Dynamic changes in genomic 5-hydroxymethyluracil and N6-methyladenine levels in the Drosophila melanogaster life cycle and in response to different temperature conditions.

Authors:  Marta Starczak; Maciej Gawronski; Aleksandra Wasilow; Pawel Mijewski; Ryszard Olinski; Daniel Gackowski
Journal:  Sci Rep       Date:  2022-10-20       Impact factor: 4.996

2.  Drosophila Tet Is Required for Maintaining Glial Homeostasis in Developing and Adult Fly Brains.

Authors:  Felice Frey; Jawdat Sandakly; Mirna Ghannam; Caren Doueiry; Fredrik Hugosson; Johannes Berlandi; Joy N Ismail; Tenzin Gayden; Martin Hasselblatt; Nada Jabado; Margret Shirinian
Journal:  eNeuro       Date:  2022-04-26
  2 in total

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