Literature DB >> 26816380

RNA biochemistry. Transcriptome-wide distribution and function of RNA hydroxymethylcytosine.

Benjamin Delatte1, Fei Wang2, Long Vo Ngoc3, Evelyne Collignon1, Elise Bonvin1, Rachel Deplus1, Emilie Calonne1, Bouchra Hassabi1, Pascale Putmans1, Stephan Awe4, Collin Wetzel5, Judith Kreher4, Romuald Soin3, Catherine Creppe1, Patrick A Limbach5, Cyril Gueydan3, Véronique Kruys3, Alexander Brehm4, Svetlana Minakhina2, Matthieu Defrance1, Ruth Steward2, François Fuks6.   

Abstract

Hydroxymethylcytosine, well described in DNA, occurs also in RNA. Here, we show that hydroxymethylcytosine preferentially marks polyadenylated RNAs and is deposited by Tet in Drosophila. We map the transcriptome-wide hydroxymethylation landscape, revealing hydroxymethylcytosine in the transcripts of many genes, notably in coding sequences, and identify consensus sites for hydroxymethylation. We found that RNA hydroxymethylation can favor mRNA translation. Tet and hydroxymethylated RNA are found to be most abundant in the Drosophila brain, and Tet-deficient fruitflies suffer impaired brain development, accompanied by decreased RNA hydroxymethylation. This study highlights the distribution, localization, and function of cytosine hydroxymethylation and identifies central roles for this modification in Drosophila.
Copyright © 2016, American Association for the Advancement of Science.

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Year:  2016        PMID: 26816380     DOI: 10.1126/science.aac5253

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  158 in total

Review 1.  RNA modifications and structures cooperate to guide RNA-protein interactions.

Authors:  Cole J T Lewis; Tao Pan; Auinash Kalsotra
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-01       Impact factor: 94.444

2.  miCLIP-MaPseq Identifies Substrates of Radical SAM RNA-Methylating Enzyme Using Mechanistic Cross-Linking and Mismatch Profiling.

Authors:  Vanja Stojković; David E Weinberg; Danica Galonić Fujimori
Journal:  Methods Mol Biol       Date:  2021

Review 3.  Discovering and Mapping the Modified Nucleotides That Comprise the Epitranscriptome of mRNA.

Authors:  Bastian Linder; Samie R Jaffrey
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

Review 4.  Diverse and dynamic DNA modifications in brain and diseases.

Authors:  Matthew J Armstrong; Yulin Jin; Emily G Allen; Peng Jin
Journal:  Hum Mol Genet       Date:  2019-11-21       Impact factor: 6.150

5.  Novel ribonuclease activity of cusativin from Cucumis sativus for mapping nucleoside modifications in RNA.

Authors:  Balasubrahmanyam Addepalli; Sarah Venus; Priti Thakur; Patrick A Limbach
Journal:  Anal Bioanal Chem       Date:  2017-07-20       Impact factor: 4.142

Review 6.  Chemical and structural effects of base modifications in messenger RNA.

Authors:  Emily M Harcourt; Anna M Kietrys; Eric T Kool
Journal:  Nature       Date:  2017-01-18       Impact factor: 49.962

Review 7.  Detecting RNA modifications in the epitranscriptome: predict and validate.

Authors:  Mark Helm; Yuri Motorin
Journal:  Nat Rev Genet       Date:  2017-02-20       Impact factor: 53.242

8.  12th Conference on Transcription and Chromatin - August 27-30, 2016 - Heidelberg, Germany.

Authors:  Sascha H C Duttke
Journal:  Epigenetics       Date:  2016-11-01       Impact factor: 4.528

9.  Active N6-Methyladenine Demethylation by DMAD Regulates Gene Expression by Coordinating with Polycomb Protein in Neurons.

Authors:  Bing Yao; Yujing Li; Zhiqin Wang; Li Chen; Mickael Poidevin; Can Zhang; Li Lin; Feng Wang; Han Bao; Bin Jiao; Junghwa Lim; Ying Cheng; Luoxiu Huang; Brittany Lynn Phillips; Tianlei Xu; Ranhui Duan; Kenneth H Moberg; Hao Wu; Peng Jin
Journal:  Mol Cell       Date:  2018-08-02       Impact factor: 17.970

10.  EndoVIPER-seq for Improved Detection of A-to-I Editing Sites in Cellular RNA.

Authors:  Steve D Knutson; Jennifer M Heemstra
Journal:  Curr Protoc Chem Biol       Date:  2020-06
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