Literature DB >> 29924582

Dynamic Nuclear Polarization Nuclear Magnetic Resonance in Human Cells Using Fluorescent Polarizing Agents.

Brice J Albert1, Chukun Gao1, Erika L Sesti1, Edward P Saliba1, Nicholas Alaniva1, Faith J Scott1, Snorri Th Sigurdsson2, Alexander B Barnes1.   

Abstract

Solid state nuclear magnetic resonance (NMR) enables atomic-resolution characterization of the molecular structure and dynamics within complex heterogeneous samples, but it is typically insensitive. Dynamic nuclear polarization (DNP) increases the NMR signal intensity by orders of magnitude and can be performed in combination with magic angle spinning (MAS) for sensitive, high-resolution spectroscopy. Here we report MAS DNP experiments, for the first time, within intact human cells with >40-fold DNP enhancement and a sample temperature of <6 K. In addition to cryogenic MAS results at <6 K, we also show in-cell DNP enhancements of 57-fold at 90 K. In-cell DNP is demonstrated using biradicals and sterically shielded monoradicals as polarizing agents. A novel trimodal polarizing agent is introduced for DNP, which contains a nitroxide biradical, a targeting peptide for cell penetration, and a fluorophore for subcellular localization with confocal microscopy. The fluorescent polarizing agent provides in-cell DNP enhancements of 63-fold at a concentration of 2.7 mM. These experiments pave the way for structural characterization of biomolecules in an endogenous cellular context.

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Year:  2018        PMID: 29924582      PMCID: PMC6842659          DOI: 10.1021/acs.biochem.8b00257

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  39 in total

1.  A structural model for Alzheimer's beta -amyloid fibrils based on experimental constraints from solid state NMR.

Authors:  Aneta T Petkova; Yoshitaka Ishii; John J Balbach; Oleg N Antzutkin; Richard D Leapman; Frank Delaglio; Robert Tycko
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-12       Impact factor: 11.205

2.  Polarization-enhanced NMR spectroscopy of biomolecules in frozen solution.

Authors:  D A Hall; D C Maus; G J Gerfen; S J Inati; L R Becerra; F W Dahlquist; R G Griffin
Journal:  Science       Date:  1997-05-09       Impact factor: 47.728

3.  Magic angle spinning NMR below 6 K with a computational fluid dynamics analysis of fluid flow and temperature gradients.

Authors:  Erika L Sesti; Nicholas Alaniva; Peter W Rand; Eric J Choi; Brice J Albert; Edward P Saliba; Faith J Scott; Alexander B Barnes
Journal:  J Magn Reson       Date:  2017-11-11       Impact factor: 2.229

4.  NMR Signal Quenching from Bound Biradical Affinity Reagents in DNP Samples.

Authors:  Rivkah Rogawski; Ivan V Sergeyev; Yinglu Zhang; Timothy H Tran; Yongjun Li; Liang Tong; Ann E McDermott
Journal:  J Phys Chem B       Date:  2017-11-29       Impact factor: 2.991

5.  Protein structure determination in living cells by in-cell NMR spectroscopy.

Authors:  Daisuke Sakakibara; Atsuko Sasaki; Teppei Ikeya; Junpei Hamatsu; Tomomi Hanashima; Masaki Mishima; Masatoshi Yoshimasu; Nobuhiro Hayashi; Tsutomu Mikawa; Markus Wälchli; Brian O Smith; Masahiro Shirakawa; Peter Güntert; Yutaka Ito
Journal:  Nature       Date:  2009-03-05       Impact factor: 49.962

6.  Functional and shunt states of bacteriorhodopsin resolved by 250 GHz dynamic nuclear polarization-enhanced solid-state NMR.

Authors:  Vikram S Bajaj; Melody L Mak-Jurkauskas; Marina Belenky; Judith Herzfeld; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

7.  Solid-state NMR on bacterial cells: selective cell wall signal enhancement and resolution improvement using dynamic nuclear polarization.

Authors:  Hiroki Takahashi; Isabel Ayala; Michel Bardet; Gaël De Paëpe; Jean-Pierre Simorre; Sabine Hediger
Journal:  J Am Chem Soc       Date:  2013-02-12       Impact factor: 15.419

8.  Contribution of linker stability to the activities of anticancer immunoconjugates.

Authors:  Stephen C Alley; Dennis R Benjamin; Scott C Jeffrey; Nicole M Okeley; Damon L Meyer; Russell J Sanderson; Peter D Senter
Journal:  Bioconjug Chem       Date:  2008-03-04       Impact factor: 4.774

9.  Cellular uptake of antisense morpholino oligomers conjugated to arginine-rich peptides.

Authors:  Hong M Moulton; Michelle H Nelson; Susie A Hatlevig; Muralimohan T Reddy; Patrick L Iversen
Journal:  Bioconjug Chem       Date:  2004 Mar-Apr       Impact factor: 4.774

10.  Differential incorporation of glucose into biomass during Warburg metabolism.

Authors:  Ying-Jr Chen; Xiaojing Huang; Nathaniel G Mahieu; Kevin Cho; Jacob Schaefer; Gary J Patti
Journal:  Biochemistry       Date:  2014-07-15       Impact factor: 3.162

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  18 in total

1.  Targetable Tetrazine-Based Dynamic Nuclear Polarization Agents for Biological Systems.

Authors:  Byung Joon Lim; Bryce E Ackermann; Galia T Debelouchina
Journal:  Chembiochem       Date:  2020-01-21       Impact factor: 3.164

2.  Characterizing proteins in a native bacterial environment using solid-state NMR spectroscopy.

Authors:  Siddarth Narasimhan; Cecilia Pinto; Alessandra Lucini Paioni; Johan van der Zwan; Gert E Folkers; Marc Baldus
Journal:  Nat Protoc       Date:  2021-01-13       Impact factor: 13.491

3.  19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies.

Authors:  Manman Lu; Mingzhang Wang; Ivan V Sergeyev; Caitlin M Quinn; Jochem Struppe; Melanie Rosay; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2019-04-01       Impact factor: 15.419

4.  Stability of the nitroxide biradical AMUPol in intact and lysed mammalian cells.

Authors:  Rupam Ghosh; Rania Dumarieh; Yiling Xiao; Kendra K Frederick
Journal:  J Magn Reson       Date:  2022-01-31       Impact factor: 2.229

5.  Design Principles for the Development of Gd(III) Polarizing Agents for Magic Angle Spinning Dynamic Nuclear Polarization.

Authors:  Yu Rao; Chad T Palumbo; Amrit Venkatesh; Megan Keener; Gabriele Stevanato; Anne-Sophie Chauvin; Georges Menzildjian; Sergei Kuzin; Maxim Yulikov; Gunnar Jeschke; Anne Lesage; Marinella Mazzanti; Lyndon Emsley
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-07-05       Impact factor: 4.177

6.  Succinyl-DOTOPA: An effective triradical dopant for low-temperature dynamic nuclear polarization with high solubility in aqueous solvent mixtures at neutral pH.

Authors:  Wai-Ming Yau; Jaekyun Jeon; Robert Tycko
Journal:  J Magn Reson       Date:  2019-12-20       Impact factor: 2.229

Review 7.  Biomolecular complex viewed by dynamic nuclear polarization solid-state NMR spectroscopy.

Authors:  Arnab Chakraborty; Fabien Deligey; Jenny Quach; Frederic Mentink-Vigier; Ping Wang; Tuo Wang
Journal:  Biochem Soc Trans       Date:  2020-06-30       Impact factor: 5.407

8.  In-Cell Sensitivity-Enhanced NMR of Intact Viable Mammalian Cells.

Authors:  Rupam Ghosh; Yiling Xiao; Jaka Kragelj; Kendra K Frederick
Journal:  J Am Chem Soc       Date:  2021-11-01       Impact factor: 15.419

Review 9.  Targeted DNP for biomolecular solid-state NMR.

Authors:  Diego Gauto; Ons Dakhlaoui; Ildefonso Marin-Montesinos; Sabine Hediger; Gaël De Paëpe
Journal:  Chem Sci       Date:  2021-03-23       Impact factor: 9.825

10.  In-Cell Quantification of Drugs by Magic-Angle Spinning Dynamic Nuclear Polarization NMR.

Authors:  Andrea Bertarello; Pierrick Berruyer; Markus Artelsmair; Charles S Elmore; Sepideh Heydarkhan-Hagvall; Markus Schade; Elisabetta Chiarparin; Staffan Schantz; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2022-04-06       Impact factor: 16.383

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