Literature DB >> 32379300

Biomolecular complex viewed by dynamic nuclear polarization solid-state NMR spectroscopy.

Arnab Chakraborty1, Fabien Deligey1, Jenny Quach1, Frederic Mentink-Vigier2, Ping Wang3, Tuo Wang1.   

Abstract

Solid-state nuclear magnetic resonance (ssNMR) is an indispensable tool for elucidating the structure and dynamics of insoluble and non-crystalline biomolecules. The recent advances in the sensitivity-enhancing technique magic-angle spinning dynamic nuclear polarization (MAS-DNP) have substantially expanded the territory of ssNMR investigations and enabled the detection of polymer interfaces in a cellular environment. This article highlights the emerging MAS-DNP approaches and their applications to the analysis of biomolecular composites and intact cells to determine the folding pathway and ligand binding of proteins, the structural polymorphism of low-populated biopolymers, as well as the physical interactions between carbohydrates, proteins, and lignin. These structural features provide an atomic-level understanding of many cellular processes, promoting the development of better biomaterials and inhibitors. It is anticipated that the capabilities of MAS-DNP in biomolecular and biomaterial research will be further enlarged by the rapid development of instrumentation and methodology.
© 2020 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  cell wall; dynamic nuclear polarization; membrane proteins; pathogenic fungi; polysaccharides; solid-state NMR

Mesh:

Substances:

Year:  2020        PMID: 32379300      PMCID: PMC7565284          DOI: 10.1042/BST20191084

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  98 in total

1.  Structural description of surfaces and interfaces in biominerals by DNP SENS.

Authors:  Thierry Azaïs; Stanislas Von Euw; Widad Ajili; Stéphanie Auzoux-Bordenave; Philippe Bertani; David Gajan; Lyndon Emsley; Nadine Nassif; Anne Lesage
Journal:  Solid State Nucl Magn Reson       Date:  2019-06-11       Impact factor: 2.293

2.  Low-temperature dynamic nuclear polarization at 9.4 T with a 30 mW microwave source.

Authors:  Kent R Thurber; Wai-Ming Yau; Robert Tycko
Journal:  J Magn Reson       Date:  2010-03-23       Impact factor: 2.229

3.  Influenza virus M2 protein mediates ESCRT-independent membrane scission.

Authors:  Jeremy S Rossman; Xianghong Jing; George P Leser; Robert A Lamb
Journal:  Cell       Date:  2010-09-17       Impact factor: 41.582

4.  Spectral snapshots of bacterial cell-wall composition and the influence of antibiotics by whole-cell NMR.

Authors:  Rie Nygaard; Joseph A H Romaniuk; David M Rice; Lynette Cegelski
Journal:  Biophys J       Date:  2015-03-24       Impact factor: 4.033

5.  Cellulose Structural Polymorphism in Plant Primary Cell Walls Investigated by High-Field 2D Solid-State NMR Spectroscopy and Density Functional Theory Calculations.

Authors:  Tuo Wang; Hui Yang; James D Kubicki; Mei Hong
Journal:  Biomacromolecules       Date:  2016-05-26       Impact factor: 6.988

6.  Two-dimensional magic angle spinning NMR investigation of naturally occurring chitins: precise 1H and 13C resonance assignment of alpha- and beta-chitin.

Authors:  Hiroyuki Kono
Journal:  Biopolymers       Date:  2004-10-15       Impact factor: 2.505

7.  Structure and dynamics of Brachypodium primary cell wall polysaccharides from two-dimensional (13)C solid-state nuclear magnetic resonance spectroscopy.

Authors:  Tuo Wang; Andre Salazar; Olga A Zabotina; Mei Hong
Journal:  Biochemistry       Date:  2014-04-22       Impact factor: 3.162

8.  Theoretical aspects of Magic Angle Spinning - Dynamic Nuclear Polarization.

Authors:  Frederic Mentink-Vigier; Ümit Akbey; Hartmut Oschkinat; Shimon Vega; Akiva Feintuch
Journal:  J Magn Reson       Date:  2015-07-13       Impact factor: 2.229

9.  Determining Cholesterol Binding to Membrane Proteins by Cholesterol 13C Labeling in Yeast and Dynamic Nuclear Polarization NMR.

Authors:  Matthew R Elkins; Ivan V Sergeyev; Mei Hong
Journal:  J Am Chem Soc       Date:  2018-10-30       Impact factor: 15.419

10.  Molecular architecture of softwood revealed by solid-state NMR.

Authors:  Oliver M Terrett; Jan J Lyczakowski; Li Yu; Dinu Iuga; W Trent Franks; Steven P Brown; Ray Dupree; Paul Dupree
Journal:  Nat Commun       Date:  2019-10-31       Impact factor: 14.919

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  7 in total

Review 1.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

Review 2.  Structural Elucidation and Activities of Cordyceps militaris-Derived Polysaccharides: A Review.

Authors:  Miao Miao; Wen-Qian Yu; Yuan Li; Yan-Long Sun; Shou-Dong Guo
Journal:  Front Nutr       Date:  2022-05-31

Review 3.  Targeted DNP for biomolecular solid-state NMR.

Authors:  Diego Gauto; Ons Dakhlaoui; Ildefonso Marin-Montesinos; Sabine Hediger; Gaël De Paëpe
Journal:  Chem Sci       Date:  2021-03-23       Impact factor: 9.825

Review 4.  A perspective on the PDB's impact on the field of glycobiology.

Authors:  James H Prestegard
Journal:  J Biol Chem       Date:  2021-03-17       Impact factor: 5.157

5.  A molecular vision of fungal cell wall organization by functional genomics and solid-state NMR.

Authors:  Arnab Chakraborty; Liyanage D Fernando; Wenxia Fang; Malitha C Dickwella Widanage; Pingzhen Wei; Cheng Jin; Thierry Fontaine; Jean-Paul Latgé; Tuo Wang
Journal:  Nat Commun       Date:  2021-11-03       Impact factor: 14.919

6.  Structure of In Vitro-Synthesized Cellulose Fibrils Viewed by Cryo-Electron Tomography and 13C Natural-Abundance Dynamic Nuclear Polarization Solid-State NMR.

Authors:  Fabien Deligey; Mark A Frank; Sung Hyun Cho; Alex Kirui; Frederic Mentink-Vigier; Matthew T Swulius; B Tracy Nixon; Tuo Wang
Journal:  Biomacromolecules       Date:  2022-03-26       Impact factor: 6.978

7.  The distance between g-tensors of nitroxide biradicals governs MAS-DNP performance: The case of the bTurea family.

Authors:  Frédéric Mentink-Vigier; Thierry Dubroca; Johan Van Tol; Snorri Th Sigurdsson
Journal:  J Magn Reson       Date:  2021-06-24       Impact factor: 2.734

  7 in total

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