Literature DB >> 31746101

Targetable Tetrazine-Based Dynamic Nuclear Polarization Agents for Biological Systems.

Byung Joon Lim1, Bryce E Ackermann1, Galia T Debelouchina1.   

Abstract

Dynamic nuclear polarization (DNP) has shown great promise as a tool to enhance the nuclear magnetic resonance signals of proteins in the cellular environment. As sensitivity increases, the ability to select and efficiently polarize a specific macromolecule over the cellular background has become desirable. Herein, we address this need and present a tetrazine-based DNP agent that can be targeted selectively to proteins containing the unnatural amino acid (UAA) norbornene-lysine. This UAA can be introduced efficiently into the cellular milieu by genetic means. Our approach is bio-orthogonal and easily adaptable to any protein of interest. We illustrate the scope of our methodology and investigate the DNP transfer mechanisms in several biological systems. Our results shed light on the complex polarization-transfer pathways in targeted DNP and ultimately pave the way to selective DNP-enhanced NMR spectroscopy in both bacterial and mammalian cells.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; amber suppression; bioconjugation; protein chemistry; structural biology

Year:  2020        PMID: 31746101      PMCID: PMC7445144          DOI: 10.1002/cbic.201900609

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  47 in total

1.  Solid-state NMR spectroscopy on cellular preparations enhanced by dynamic nuclear polarization.

Authors:  Marie Renault; Shane Pawsey; Martine P Bos; Eline J Koers; Deepak Nand; Ria Tommassen-van Boxtel; Melanie Rosay; Jan Tommassen; Werner E Maas; Marc Baldus
Journal:  Angew Chem Int Ed Engl       Date:  2012-02-01       Impact factor: 15.336

2.  Highly efficient, water-soluble polarizing agents for dynamic nuclear polarization at high frequency.

Authors:  Claire Sauvée; Melanie Rosay; Gilles Casano; Fabien Aussenac; Ralph T Weber; Olivier Ouari; Paul Tordo
Journal:  Angew Chem Int Ed Engl       Date:  2013-08-16       Impact factor: 15.336

Review 3.  Single-molecule FRET and crosslinking studies in structural biology enabled by noncanonical amino acids.

Authors:  Swati Tyagi; Edward A Lemke
Journal:  Curr Opin Struct Biol       Date:  2015-03-08       Impact factor: 6.809

4.  Optimization of an absolute sensitivity in a glassy matrix during DNP-enhanced multidimensional solid-state NMR experiments.

Authors:  Hiroki Takahashi; Carlos Fernández-de-Alba; Daniel Lee; Vincent Maurel; Serge Gambarelli; Michel Bardet; Sabine Hediger; Anne-Laure Barra; Gaël De Paëpe
Journal:  J Magn Reson       Date:  2013-12-17       Impact factor: 2.229

5.  Genetically encoded norbornene directs site-specific cellular protein labelling via a rapid bioorthogonal reaction.

Authors:  Kathrin Lang; Lloyd Davis; Jessica Torres-Kolbus; Chungjung Chou; Alexander Deiters; Jason W Chin
Journal:  Nat Chem       Date:  2012-02-05       Impact factor: 24.427

Review 6.  Dynamic nuclear polarization for sensitivity enhancement in modern solid-state NMR.

Authors:  Aany Sofia Lilly Thankamony; Johannes J Wittmann; Monu Kaushik; Björn Corzilius
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2017-07-23       Impact factor: 9.795

7.  EPR Distance Measurements in Native Proteins with Genetically Encoded Spin Labels.

Authors:  Moritz J Schmidt; Artem Fedoseev; Dennis Bücker; Julia Borbas; Christine Peter; Malte Drescher; Daniel Summerer
Journal:  ACS Chem Biol       Date:  2015-10-06       Impact factor: 5.100

8.  EGFR Dynamics Change during Activation in Native Membranes as Revealed by NMR.

Authors:  Mohammed Kaplan; Siddarth Narasimhan; Cecilia de Heus; Deni Mance; Sander van Doorn; Klaartje Houben; Dušan Popov-Čeleketić; Reinier Damman; Eugene A Katrukha; Purvi Jain; Willie J C Geerts; Albert J R Heck; Gert E Folkers; Lukas C Kapitein; Simone Lemeer; Paul M P van Bergen En Henegouwen; Marc Baldus
Journal:  Cell       Date:  2016-11-10       Impact factor: 41.582

9.  Broadband homonuclear correlation spectroscopy driven by combined R2(n)(v) sequences under fast magic angle spinning for NMR structural analysis of organic and biological solids.

Authors:  Guangjin Hou; Si Yan; Julien Trébosc; Jean-Paul Amoureux; Tatyana Polenova
Journal:  J Magn Reson       Date:  2013-04-28       Impact factor: 2.229

10.  Theoretical aspects of Magic Angle Spinning - Dynamic Nuclear Polarization.

Authors:  Frederic Mentink-Vigier; Ümit Akbey; Hartmut Oschkinat; Shimon Vega; Akiva Feintuch
Journal:  J Magn Reson       Date:  2015-07-13       Impact factor: 2.229

View more
  7 in total

1.  TOAC spin-labeled peptides tailored for DNP-NMR studies in lipid membrane environments.

Authors:  Shiying Zhu; Ehsan Kachooei; Jeffrey R Harmer; Louise J Brown; Frances Separovic; Marc-Antoine Sani
Journal:  Biophys J       Date:  2021-09-02       Impact factor: 3.699

2.  DNP-enhanced solid-state NMR spectroscopy of chromatin polymers.

Authors:  Nesreen Elathram; Bryce E Ackermann; Galia T Debelouchina
Journal:  J Magn Reson Open       Date:  2022-03-26

3.  A Chemical Biology Primer for NMR Spectroscopists.

Authors:  Evan T Clark; Elanor E Sievers; Galia T Debelouchina
Journal:  J Magn Reson Open       Date:  2022-02-18

4.  Cryogenic Sample Loading into a Magic Angle Spinning Nuclear Magnetic Resonance Spectrometer that Preserves Cellular Viability.

Authors:  Rupam Ghosh; Jaka Kragelj; Yiling Xiao; Kendra K Frederick
Journal:  J Vis Exp       Date:  2020-09-01       Impact factor: 1.355

Review 5.  Biomolecular complex viewed by dynamic nuclear polarization solid-state NMR spectroscopy.

Authors:  Arnab Chakraborty; Fabien Deligey; Jenny Quach; Frederic Mentink-Vigier; Ping Wang; Tuo Wang
Journal:  Biochem Soc Trans       Date:  2020-06-30       Impact factor: 5.407

Review 6.  Targeted DNP for biomolecular solid-state NMR.

Authors:  Diego Gauto; Ons Dakhlaoui; Ildefonso Marin-Montesinos; Sabine Hediger; Gaël De Paëpe
Journal:  Chem Sci       Date:  2021-03-23       Impact factor: 9.825

Review 7.  Emerging Contributions of Solid-State NMR Spectroscopy to Chromatin Structural Biology.

Authors:  Bryce E Ackermann; Galia T Debelouchina
Journal:  Front Mol Biosci       Date:  2021-10-11
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.