Literature DB >> 34724614

In-Cell Sensitivity-Enhanced NMR of Intact Viable Mammalian Cells.

Rupam Ghosh1, Yiling Xiao1, Jaka Kragelj1, Kendra K Frederick1,2.   

Abstract

NMR has the resolution and specificity to determine atomic-level protein structures of isotopically labeled proteins in complex environments, and with the sensitivity gains conferred by dynamic nuclear polarization (DNP), NMR has the sensitivity to detect proteins at their endogenous concentrations. However, DNP sensitivity enhancements are critically dependent on experimental conditions and sample composition. While some of these conditions are theoretically compatible with cellular viability, the effects of others on cellular sample integrity are unknown. Uncertainty about the integrity of cellular samples limits the utility of experimental outputs of in-cell experiments. Using several measures, we establish conditions that support DNP enhancements that can enable detection of micromolar concentrations of proteins in experimentally tractable times that are compatible with cellular viability. Taken together, we establish DNP-assisted MAS NMR as a technique for structural investigations of biomolecules in intact viable cells that can be phenotyped both before and after NMR experiments.

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Year:  2021        PMID: 34724614      PMCID: PMC8961430          DOI: 10.1021/jacs.1c06680

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  64 in total

1.  Quantitative NMR analysis of the protein G B1 domain in Xenopus laevis egg extracts and intact oocytes.

Authors:  Philipp Selenko; Zach Serber; Bedrick Gadea; Joan Ruderman; Gerhard Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-27       Impact factor: 11.205

2.  High-resolution heteronuclear multidimensional NMR of proteins in living insect cells using a baculovirus protein expression system.

Authors:  Jumpei Hamatsu; Daniel O'Donovan; Takashi Tanaka; Takahiro Shirai; Yuichiro Hourai; Tsutomu Mikawa; Teppei Ikeya; Masaki Mishima; Wayne Boucher; Brian O Smith; Ernest D Laue; Masahiro Shirakawa; Yutaka Ito
Journal:  J Am Chem Soc       Date:  2013-01-27       Impact factor: 15.419

Review 3.  DNP-enhanced solid-state NMR spectroscopy of active pharmaceutical ingredients.

Authors:  Li Zhao; Arthur C Pinon; Lyndon Emsley; Aaron J Rossini
Journal:  Magn Reson Chem       Date:  2018-01-10       Impact factor: 2.447

4.  Visualization of redox-controlled protein fold in living cells.

Authors:  Lucia Banci; Letizia Barbieri; Enrico Luchinat; Erica Secci
Journal:  Chem Biol       Date:  2013-06-20

5.  EGFR Dynamics Change during Activation in Native Membranes as Revealed by NMR.

Authors:  Mohammed Kaplan; Siddarth Narasimhan; Cecilia de Heus; Deni Mance; Sander van Doorn; Klaartje Houben; Dušan Popov-Čeleketić; Reinier Damman; Eugene A Katrukha; Purvi Jain; Willie J C Geerts; Albert J R Heck; Gert E Folkers; Lukas C Kapitein; Simone Lemeer; Paul M P van Bergen En Henegouwen; Marc Baldus
Journal:  Cell       Date:  2016-11-10       Impact factor: 41.582

6.  Cryoprotection of lipid membranes for high-resolution solid-state NMR studies of membrane peptides and proteins at low temperature.

Authors:  Myungwoon Lee; Mei Hong
Journal:  J Biomol NMR       Date:  2014-08       Impact factor: 2.835

7.  Sensitivity-enhanced NMR reveals alterations in protein structure by cellular milieus.

Authors:  Kendra K Frederick; Vladimir K Michaelis; Björn Corzilius; Ta-Chung Ong; Angela C Jacavone; Robert G Griffin; Susan Lindquist
Journal:  Cell       Date:  2015-10-08       Impact factor: 41.582

8.  A multi-omics analysis of recombinant protein production in Hek293 cells.

Authors:  Stefanie Dietmair; Mark P Hodson; Lake-Ee Quek; Nicholas E Timmins; Peter Gray; Lars K Nielsen
Journal:  PLoS One       Date:  2012-08-24       Impact factor: 3.240

9.  Size Specific Transfection to Mammalian Cells by Micropillar Array Electroporation.

Authors:  Yingbo Zu; Shuyan Huang; Yang Lu; Xuan Liu; Shengnian Wang
Journal:  Sci Rep       Date:  2016-12-07       Impact factor: 4.379

10.  Atomic-resolution monitoring of protein maturation in live human cells by NMR.

Authors:  Lucia Banci; Letizia Barbieri; Ivano Bertini; Enrico Luchinat; Erica Secci; Yuguang Zhao; A Radu Aricescu
Journal:  Nat Chem Biol       Date:  2013-03-03       Impact factor: 15.040

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  7 in total

1.  Stability of the nitroxide biradical AMUPol in intact and lysed mammalian cells.

Authors:  Rupam Ghosh; Rania Dumarieh; Yiling Xiao; Kendra K Frederick
Journal:  J Magn Reson       Date:  2022-01-31       Impact factor: 2.229

2.  Design Principles for the Development of Gd(III) Polarizing Agents for Magic Angle Spinning Dynamic Nuclear Polarization.

Authors:  Yu Rao; Chad T Palumbo; Amrit Venkatesh; Megan Keener; Gabriele Stevanato; Anne-Sophie Chauvin; Georges Menzildjian; Sergei Kuzin; Maxim Yulikov; Gunnar Jeschke; Anne Lesage; Marinella Mazzanti; Lyndon Emsley
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-07-05       Impact factor: 4.177

Review 3.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

4.  In-Cell Quantification of Drugs by Magic-Angle Spinning Dynamic Nuclear Polarization NMR.

Authors:  Andrea Bertarello; Pierrick Berruyer; Markus Artelsmair; Charles S Elmore; Sepideh Heydarkhan-Hagvall; Markus Schade; Elisabetta Chiarparin; Staffan Schantz; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2022-04-06       Impact factor: 16.383

5.  In-Cell NMR of Intact Mammalian Cells Preserved with the Cryoprotectants DMSO and Glycerol Have Similar DNP Performance.

Authors:  Yiling Xiao; Rupam Ghosh; Kendra K Frederick
Journal:  Front Mol Biosci       Date:  2022-01-25

6.  In-cell DNP NMR reveals multiple targeting effect of antimicrobial peptide.

Authors:  Frances Separovic; Vinzenz Hofferek; Anthony P Duff; Malcom J McConville; Marc-Antoine Sani
Journal:  J Struct Biol X       Date:  2022-09-13

7.  Solid-state NMR analysis of unlabeled fungal cell walls from Aspergillus and Candida species.

Authors:  Liyanage D Fernando; Malitha C Dickwella Widanage; S Chandra Shekar; Frederic Mentink-Vigier; Ping Wang; Sungsool Wi; Tuo Wang
Journal:  J Struct Biol X       Date:  2022-07-19
  7 in total

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