Literature DB >> 30871317

19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies.

Manman Lu1,2,3, Mingzhang Wang1,2, Ivan V Sergeyev4, Caitlin M Quinn1, Jochem Struppe4, Melanie Rosay4, Werner Maas4, Angela M Gronenborn2,3, Tatyana Polenova1,2.   

Abstract

We report remarkably high, up to 100-fold, signal enhancements in 19F dynamic nuclear polarization (DNP) magic angle spinning (MAS) spectra at 14.1 T on HIV-1 capsid protein (CA) assemblies. These enhancements correspond to absolute sensitivity ratios of 12-29 and are of similar magnitude to those seen for 1H signals in the same samples. At MAS frequencies above 20 kHz, it was possible to record 2D 19F-13C HETCOR spectra, which contain long-range intra- and intermolecular correlations. Such correlations provide unique distance restraints, inaccessible in conventional experiments without DNP, for protein structure determination. Furthermore, systematic quantification of the DNP enhancements as a function of biradical concentration, MAS frequency, temperature, and microwave power is reported. Our work establishes the power of DNP-enhanced 19F MAS NMR spectroscopy for structural characterization of HIV-1 CA assemblies, and this approach is anticipated to be applicable to a wide range of large biomolecular systems.

Entities:  

Year:  2019        PMID: 30871317      PMCID: PMC6521953          DOI: 10.1021/jacs.8b09216

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  67 in total

1.  Sensitivity-enhanced NMR of biological solids: dynamic nuclear polarization of Y21M fd bacteriophage and purple membrane.

Authors:  M Rosay; A C Zeri; N S Astrof; S J Opella; J Herzfeld; R G Griffin
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

2.  Resolution and polarization distribution in cryogenic DNP/MAS experiments.

Authors:  Alexander B Barnes; Björn Corzilius; Melody L Mak-Jurkauskas; Loren B Andreas; Vikram S Bajaj; Yoh Matsuki; Marina L Belenky; Johan Lugtenburg; Jagadishwar R Sirigiri; Richard J Temkin; Judith Herzfeld; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

3.  High-frequency dynamic nuclear polarization in MAS spectra of membrane and soluble proteins.

Authors:  Melanie Rosay; Jonathan C Lansing; Kristin C Haddad; William W Bachovchin; Judith Herzfeld; Richard J Temkin; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

4.  Dynamic nuclear polarization with biradicals.

Authors:  Kan-Nian Hu; Hsiao-hua Yu; Timothy M Swager; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2004-09-08       Impact factor: 15.419

5.  Dynamic nuclear polarization of deuterated proteins.

Authors:  Ümit Akbey; W Trent Franks; Arne Linden; Sascha Lange; Robert G Griffin; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  Angew Chem Int Ed Engl       Date:  2010-10-11       Impact factor: 15.336

6.  Protein structure determination by high-resolution solid-state NMR spectroscopy: application to microcrystalline ubiquitin.

Authors:  Stephan G Zech; A Joshua Wand; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

7.  Dynamic nuclear polarization of amyloidogenic peptide nanocrystals: GNNQQNY, a core segment of the yeast prion protein Sup35p.

Authors:  Patrick C A van der Wel; Kan-Nian Hu; Józef Lewandowski; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2006-08-23       Impact factor: 15.419

8.  Measurement of sample temperatures under magic-angle spinning from the chemical shift and spin-lattice relaxation rate of 79Br in KBr powder.

Authors:  Kent R Thurber; Robert Tycko
Journal:  J Magn Reson       Date:  2008-09-25       Impact factor: 2.229

9.  Assembly properties of the human immunodeficiency virus type 1 CA protein.

Authors:  Barbie K Ganser-Pornillos; Uta K von Schwedler; Kirsten M Stray; Christopher Aiken; Wesley I Sundquist
Journal:  J Virol       Date:  2004-03       Impact factor: 5.103

10.  Structural convergence between Cryo-EM and NMR reveals intersubunit interactions critical for HIV-1 capsid function.

Authors:  In-Ja L Byeon; Xin Meng; Jinwon Jung; Gongpu Zhao; Ruifeng Yang; Jinwoo Ahn; Jiong Shi; Jason Concel; Christopher Aiken; Peijun Zhang; Angela M Gronenborn
Journal:  Cell       Date:  2009-11-13       Impact factor: 41.582

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  17 in total

1.  Measurement of Accurate Interfluorine Distances in Crystalline Organic Solids: A High-Frequency Magic Angle Spinning NMR Approach.

Authors:  Matthew Fritz; Jodi Kraus; Caitlin M Quinn; Glenn P A Yap; Jochem Struppe; Ivan V Sergeyev; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2019-12-10       Impact factor: 2.991

2.  Binding Sites of a Positron Emission Tomography Imaging Agent in Alzheimer's β-Amyloid Fibrils Studied Using 19F Solid-State NMR.

Authors:  Pu Duan; Kelly J Chen; Gayani Wijegunawardena; Aurelio J Dregni; Harrison K Wang; Haifan Wu; Mei Hong
Journal:  J Am Chem Soc       Date:  2022-01-11       Impact factor: 15.419

Review 3.  Small, but powerful and attractive: 19F in biomolecular NMR.

Authors:  Angela M Gronenborn
Journal:  Structure       Date:  2021-12-13       Impact factor: 5.006

4.  The precious fluorine on the ring: fluorine NMR for biological systems.

Authors:  Andras Boeszoermenyi; Barbara Ogórek; Akshay Jain; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2020-07-10       Impact factor: 2.835

5.  Two-dimensional 19F-13C correlation NMR for 19F resonance assignment of fluorinated proteins.

Authors:  Alexander A Shcherbakov; Matthias Roos; Byungsu Kwon; Mei Hong
Journal:  J Biomol NMR       Date:  2020-02-22       Impact factor: 2.835

6.  Site-specific dynamic nuclear polarization in a Gd(III)-labeled protein.

Authors:  Jörg Heiliger; Tobias Matzel; Erhan Can Çetiner; Harald Schwalbe; Georg Kuenze; Björn Corzilius
Journal:  Phys Chem Chem Phys       Date:  2020-11-18       Impact factor: 3.676

Review 7.  Biomolecular complex viewed by dynamic nuclear polarization solid-state NMR spectroscopy.

Authors:  Arnab Chakraborty; Fabien Deligey; Jenny Quach; Frederic Mentink-Vigier; Ping Wang; Tuo Wang
Journal:  Biochem Soc Trans       Date:  2020-06-30       Impact factor: 5.407

8.  Characterization of photonic band resonators for DNP NMR of thin film samples at 7 T magnetic field.

Authors:  Alexander A Nevzorov; Antonin Marek; Sergey Milikisiyants; Alex I Smirnov
Journal:  J Magn Reson       Date:  2020-12-13       Impact factor: 2.229

9.  Meet the IUPAB councilor - Angela M. Gronenborn.

Authors:  Angela M Gronenborn
Journal:  Biophys Rev       Date:  2021-11-19

Review 10.  Visualizing HIV-1 Capsid and Its Interactions with Antivirals and Host Factors.

Authors:  Morganne Wilbourne; Peijun Zhang
Journal:  Viruses       Date:  2021-02-04       Impact factor: 5.818

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