Literature DB >> 29520682

Deuteration and selective labeling of alanine methyl groups of β2-adrenergic receptor expressed in a baculovirus-insect cell expression system.

Yutaka Kofuku1, Tomoki Yokomizo1, Shunsuke Imai1, Yutaro Shiraishi1, Mei Natsume1, Hiroaki Itoh1, Masayuki Inoue1, Kunio Nakata2, Shunsuke Igarashi2, Hideyuki Yamaguchi2, Toshimi Mizukoshi2, Ei-Ichiro Suzuki2,3, Takumi Ueda1,4, Ichio Shimada5.   

Abstract

G protein-coupled receptors (GPCRs) exist in equilibrium between multiple conformations, and their populations and exchange rates determine their functions. However, analyses of the conformational dynamics of GPCRs in lipid bilayers are still challenging, because methods for observations of NMR signals of large proteins expressed in a baculovirus-insect cell expression system (BVES) are limited. Here, we report a method to incorporate methyl-13C1H3-labeled alanine with > 45% efficiency in highly deuterated proteins expressed in BVES. Application of the method to the NMR observations of β2-adrenergic receptor in micelles and in nanodiscs revealed the ligand-induced conformational differences throughout the transmembrane region of the GPCR.

Entities:  

Keywords:  Alanine; Baculovirus-insect cell expression system; G protein-coupled receptor; Membrane protein; Methyl TROSY

Mesh:

Substances:

Year:  2018        PMID: 29520682     DOI: 10.1007/s10858-018-0174-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  44 in total

1.  β₂-adrenergic receptor activation by agonists studied with ¹⁹F NMR spectroscopy.

Authors:  Reto Horst; Jeffrey J Liu; Raymond C Stevens; Kurt Wüthrich
Journal:  Angew Chem Int Ed Engl       Date:  2013-08-16       Impact factor: 15.336

2.  Role of detergents in conformational exchange of a G protein-coupled receptor.

Authors:  Ka Young Chung; Tae Hun Kim; Aashish Manglik; Rohan Alvares; Brian K Kobilka; R Scott Prosser
Journal:  J Biol Chem       Date:  2012-08-14       Impact factor: 5.157

Review 3.  Successful Strategies to Determine High-Resolution Structures of GPCRs.

Authors:  Jin Xiang; Eugene Chun; Chang Liu; Liang Jing; Zina Al-Sahouri; Lan Zhu; Wei Liu
Journal:  Trends Pharmacol Sci       Date:  2016-10-07       Impact factor: 14.819

4.  Allosteric Coupling of Drug Binding and Intracellular Signaling in the A2A Adenosine Receptor.

Authors:  Matthew T Eddy; Ming-Yue Lee; Zhan-Guo Gao; Kate L White; Tatiana Didenko; Reto Horst; Martin Audet; Pawel Stanczak; Kyle M McClary; Gye Won Han; Kenneth A Jacobson; Raymond C Stevens; Kurt Wüthrich
Journal:  Cell       Date:  2017-12-28       Impact factor: 41.582

5.  Substrate limitation in the baculovirus expression vector system.

Authors:  K M Radford; S Reid; P F Greenfield
Journal:  Biotechnol Bioeng       Date:  1997-10-05       Impact factor: 4.530

6.  Propagation of conformational changes during μ-opioid receptor activation.

Authors:  Rémy Sounier; Camille Mas; Jan Steyaert; Toon Laeremans; Aashish Manglik; Weijiao Huang; Brian K Kobilka; Héléne Déméné; Sébastien Granier
Journal:  Nature       Date:  2015-08-05       Impact factor: 49.962

Review 7.  The role of protein dynamics in GPCR function: insights from the β2AR and rhodopsin.

Authors:  Aashish Manglik; Brian Kobilka
Journal:  Curr Opin Cell Biol       Date:  2014-02-17       Impact factor: 8.382

8.  Conductance of P2X4 purinergic receptor is determined by conformational equilibrium in the transmembrane region.

Authors:  Yuichi Minato; Shiho Suzuki; Tomoaki Hara; Yutaka Kofuku; Go Kasuya; Yuichiro Fujiwara; Shunsuke Igarashi; Ei-Ichiro Suzuki; Osamu Nureki; Motoyuki Hattori; Takumi Ueda; Ichio Shimada
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-11       Impact factor: 11.205

9.  Crystal structure of the β2 adrenergic receptor-Gs protein complex.

Authors:  Søren G F Rasmussen; Brian T DeVree; Yaozhong Zou; Andrew C Kruse; Ka Young Chung; Tong Sun Kobilka; Foon Sun Thian; Pil Seok Chae; Els Pardon; Diane Calinski; Jesper M Mathiesen; Syed T A Shah; Joseph A Lyons; Martin Caffrey; Samuel H Gellman; Jan Steyaert; Georgios Skiniotis; William I Weis; Roger K Sunahara; Brian K Kobilka
Journal:  Nature       Date:  2011-07-19       Impact factor: 49.962

10.  Ligand modulation of sidechain dynamics in a wild-type human GPCR.

Authors:  Lindsay D Clark; Igor Dikiy; Karen Chapman; Karin Ej Rödström; James Aramini; Michael V LeVine; George Khelashvili; Søren Gf Rasmussen; Kevin H Gardner; Daniel M Rosenbaum
Journal:  Elife       Date:  2017-10-06       Impact factor: 8.140

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  10 in total

Review 1.  Function-related conformational dynamics of G protein-coupled receptors revealed by NMR.

Authors:  Takumi Ueda; Yutaka Kofuku; Junya Okude; Shunsuke Imai; Yutaro Shiraishi; Ichio Shimada
Journal:  Biophys Rev       Date:  2019-05-17

2.  Advanced isotopic labeling for the NMR investigation of challenging proteins and nucleic acids.

Authors:  Jerome Boisbouvier; Lewis E Kay
Journal:  J Biomol NMR       Date:  2018-07       Impact factor: 2.835

Review 3.  GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

Authors:  Ichio Shimada; Takumi Ueda; Yutaka Kofuku; Matthew T Eddy; Kurt Wüthrich
Journal:  Nat Rev Drug Discov       Date:  2018-11-09       Impact factor: 84.694

4.  The Biophysical Society of Japan (BSJ) - Miyazaki Meeting, September 2019 Session 1SHP-frontier of structure-function studies to unveil diverse GPCR signaling.

Authors:  Kota Katayama; Ryoji Suno
Journal:  Biophys Rev       Date:  2020-04-17

Review 5.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

6.  Solution NMR spectroscopy of GPCRs: Residue-specific labeling strategies with a focus on 13C-methyl methionine labeling of the atypical chemokine receptor ACKR3.

Authors:  Andrew B Kleist; Francis Peterson; Robert C Tyler; Martin Gustavsson; Tracy M Handel; Brian F Volkman
Journal:  Methods Cell Biol       Date:  2018-11-15       Impact factor: 1.441

7.  Isotopic Labeling of Eukaryotic Membrane Proteins for NMR Studies of Interactions and Dynamics.

Authors:  Igor Dikiy; Lindsay D Clark; Kevin H Gardner; Daniel M Rosenbaum
Journal:  Methods Enzymol       Date:  2018-12-18       Impact factor: 1.600

Review 8.  On the use of Pichia pastoris for isotopic labeling of human GPCRs for NMR studies.

Authors:  Lindsay Clark; Igor Dikiy; Daniel M Rosenbaum; Kevin H Gardner
Journal:  J Biomol NMR       Date:  2018-08-18       Impact factor: 2.835

9.  Local Deuteration Enables NMR Observation of Methyl Groups in Proteins from Eukaryotic and Cell-Free Expression Systems.

Authors:  Abhinav Dubey; Nikolay Stoyanov; Thibault Viennet; Sandeep Chhabra; Shantha Elter; Jan Borggräfe; Aldino Viegas; Radosław P Nowak; Nikola Burdzhiev; Ognyan Petrov; Eric S Fischer; Manuel Etzkorn; Vladimir Gelev; Haribabu Arthanari
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-06       Impact factor: 15.336

10.  Automatic structure-based NMR methyl resonance assignment in large proteins.

Authors:  Iva Pritišanac; Julia M Würz; T Reid Alderson; Peter Güntert
Journal:  Nat Commun       Date:  2019-10-29       Impact factor: 14.919

  10 in total

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