Literature DB >> 30616824

Solution NMR spectroscopy of GPCRs: Residue-specific labeling strategies with a focus on 13C-methyl methionine labeling of the atypical chemokine receptor ACKR3.

Andrew B Kleist1, Francis Peterson1, Robert C Tyler1, Martin Gustavsson2, Tracy M Handel2, Brian F Volkman3.   

Abstract

The past decade has witnessed remarkable progress in the determination of G protein-coupled receptor (GPCR) structures, profoundly expanding our understanding of how GPCRs recognize ligands, become activated, and interact with intracellular signaling components. In recent years, numerous studies have used solution nuclear magnetic resonance (NMR) spectroscopy to investigate GPCRs, providing fundamental insights into GPCR conformational changes, allostery, dynamics, and other facets of GPCR function are challenging to study using other structural techniques. Despite these advantages, NMR-based studies of GPCRs are few relative to the number of published structures, due in part to the challenges and limitations of NMR for the characterization of large membrane proteins. Several studies have circumvented these challenges using a variety of isotopic labeling strategies, including side chain derivatization and metabolic incorporation of NMR-active nuclei. In this chapter, we provide an overview of different isotopic labeling strategies and describe an in-depth protocol for the expression, purification, and NMR studies of the chemokine GPCR atypical chemokine receptor 3 (ACKR3) via 13CH3-methionine incorporation. The goal of this chapter is to provide a resource to the GPCR community for those interested in pursuing NMR studies of GPCRs.
© 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ACKR3; Atypical chemokine receptor 3; Chemokine receptor; G protein-coupled receptor; GPCR; Methionine NMR; Methyl labeling; NMR; Solution nuclear magnetic resonance

Mesh:

Substances:

Year:  2018        PMID: 30616824      PMCID: PMC6941889          DOI: 10.1016/bs.mcb.2018.09.004

Source DB:  PubMed          Journal:  Methods Cell Biol        ISSN: 0091-679X            Impact factor:   1.441


  59 in total

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3.  Production of Chemokine/Chemokine Receptor Complexes for Structural Biophysical Studies.

Authors:  Martin Gustavsson; Yi Zheng; Tracy M Handel
Journal:  Methods Enzymol       Date:  2015-12-14       Impact factor: 1.600

4.  NMR spectroscopy in studies of light-induced structural changes in mammalian rhodopsin: applicability of solution (19)F NMR.

Authors:  J Klein-Seetharaman; E V Getmanova; M C Loewen; P J Reeves; H G Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

5.  Allosteric Coupling of Drug Binding and Intracellular Signaling in the A2A Adenosine Receptor.

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Journal:  Cell       Date:  2017-12-28       Impact factor: 41.582

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Journal:  Cell       Date:  2013-01-31       Impact factor: 41.582

7.  Cross-correlated relaxation enhanced 1H[bond]13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes.

Authors:  Vitali Tugarinov; Peter M Hwang; Jason E Ollerenshaw; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

8.  Ligand-specific regulation of the extracellular surface of a G-protein-coupled receptor.

Authors:  Michael P Bokoch; Yaozhong Zou; Søren G F Rasmussen; Corey W Liu; Rie Nygaard; Daniel M Rosenbaum; Juan José Fung; Hee-Jung Choi; Foon Sun Thian; Tong Sun Kobilka; Joseph D Puglisi; William I Weis; Leonardo Pardo; R Scott Prosser; Luciano Mueller; Brian K Kobilka
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Authors:  Sang Ho Park; Bibhuti B Das; Fabio Casagrande; Ye Tian; Henry J Nothnagel; Mignon Chu; Hans Kiefer; Klaus Maier; Anna A De Angelis; Francesca M Marassi; Stanley J Opella
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Authors:  Libin Ye; Chris Neale; Adnan Sljoka; Brent Lyda; Dmitry Pichugin; Nobuyuki Tsuchimura; Sacha T Larda; Régis Pomès; Angel E García; Oliver P Ernst; Roger K Sunahara; R Scott Prosser
Journal:  Nat Commun       Date:  2018-04-10       Impact factor: 14.919

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Journal:  Science       Date:  2022-07-07       Impact factor: 63.714

2.  Evolution of fold switching in a metamorphic protein.

Authors:  Acacia F Dishman; Robert C Tyler; Jamie C Fox; Andrew B Kleist; Kenneth E Prehoda; M Madan Babu; Francis C Peterson; Brian F Volkman
Journal:  Science       Date:  2021-01-01       Impact factor: 47.728

3.  Thermostability of a recombinant G protein-coupled receptor expressed at high level in mammalian cell culture.

Authors:  Alexei Yeliseev; Arjen van den Berg; Lioudmila Zoubak; Kirk Hines; Sam Stepnowski; Kyle Williston; Wanhua Yan; Klaus Gawrisch; Jonathan Zmuda
Journal:  Sci Rep       Date:  2020-10-08       Impact factor: 4.996

4.  Analysis of β2AR-Gs and β2AR-Gi complex formation by NMR spectroscopy.

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  4 in total

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