Literature DB >> 30121871

On the use of Pichia pastoris for isotopic labeling of human GPCRs for NMR studies.

Lindsay Clark1,2, Igor Dikiy3, Daniel M Rosenbaum4,5, Kevin H Gardner6,7,8.   

Abstract

NMR studies of human integral membrane proteins provide unique opportunities to probe structure and dynamics at specific locations and on multiple timescales, often with significant implications for disease mechanism and drug development. Since membrane proteins such as G protein-coupled receptors (GPCRs) are highly dynamic and regulated by ligands or other perturbations, NMR methods are potentially well suited to answer basic functional questions (such as addressing the biophysical basis of ligand efficacy) as well as guiding applications (such as novel ligand design). However, such studies on eukaryotic membrane proteins have often been limited by the inability to incorporate optimal isotopic labels for NMR methods developed for large protein/lipid complexes, including methyl TROSY. We review the different expression systems for production of isotopically labeled membrane proteins and highlight the use of the yeast Pichia pastoris to achieve perdeuteration and 13C methyl probe incorporation within isoleucine sidechains. We further illustrate the use of this method for labeling of several biomedically significant GPCRs.

Entities:  

Keywords:  Deuteration; GPCR; Integral membrane proteins; Pichia pastoris; Solution NMR; Stable isotope labeling

Mesh:

Substances:

Year:  2018        PMID: 30121871      PMCID: PMC7282444          DOI: 10.1007/s10858-018-0204-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  72 in total

1.  Using NMRView to visualize and analyze the NMR spectra of macromolecules.

Authors:  Bruce A Johnson
Journal:  Methods Mol Biol       Date:  2004

2.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

3.  Crystal structure of the human OX2 orexin receptor bound to the insomnia drug suvorexant.

Authors:  Jie Yin; Juan Carlos Mobarec; Peter Kolb; Daniel M Rosenbaum
Journal:  Nature       Date:  2014-12-22       Impact factor: 49.962

Review 4.  Pichia pastoris as an expression host for membrane protein structural biology.

Authors:  Bernadette Byrne
Journal:  Curr Opin Struct Biol       Date:  2015-02-03       Impact factor: 6.809

5.  Conductance of P2X4 purinergic receptor is determined by conformational equilibrium in the transmembrane region.

Authors:  Yuichi Minato; Shiho Suzuki; Tomoaki Hara; Yutaka Kofuku; Go Kasuya; Yuichiro Fujiwara; Shunsuke Igarashi; Ei-Ichiro Suzuki; Osamu Nureki; Motoyuki Hattori; Takumi Ueda; Ichio Shimada
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-11       Impact factor: 11.205

6.  Experimental results on mammalian cells growing in vitro in deuterated medium for neutron-scattering studies.

Authors:  J Murphy; C Desaive; W Giaretti; F Kendall; C Nicolini
Journal:  J Cell Sci       Date:  1977-06       Impact factor: 5.285

7.  Operational strategies, monitoring and control of heterologous protein production in the methylotrophic yeast Pichia pastoris under different promoters: a review.

Authors:  Oriol Cos; Ramón Ramón; José Luis Montesinos; Francisco Valero
Journal:  Microb Cell Fact       Date:  2006-04-06       Impact factor: 5.328

8.  Structure of the voltage-gated two-pore channel TPC1 from Arabidopsis thaliana.

Authors:  Jiangtao Guo; Weizhong Zeng; Qingfeng Chen; Changkeun Lee; Liping Chen; Yi Yang; Chunlei Cang; Dejian Ren; Youxing Jiang
Journal:  Nature       Date:  2015-12-21       Impact factor: 49.962

9.  Allosteric nanobodies reveal the dynamic range and diverse mechanisms of G-protein-coupled receptor activation.

Authors:  Dean P Staus; Ryan T Strachan; Aashish Manglik; Biswaranjan Pani; Alem W Kahsai; Tae Hun Kim; Laura M Wingler; Seungkirl Ahn; Arnab Chatterjee; Ali Masoudi; Andrew C Kruse; Els Pardon; Jan Steyaert; William I Weis; R Scott Prosser; Brian K Kobilka; Tommaso Costa; Robert J Lefkowitz
Journal:  Nature       Date:  2016-07-13       Impact factor: 49.962

10.  Ligand modulation of sidechain dynamics in a wild-type human GPCR.

Authors:  Lindsay D Clark; Igor Dikiy; Karen Chapman; Karin Ej Rödström; James Aramini; Michael V LeVine; George Khelashvili; Søren Gf Rasmussen; Kevin H Gardner; Daniel M Rosenbaum
Journal:  Elife       Date:  2017-10-06       Impact factor: 8.140

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  8 in total

1.  Isotopic Labeling of Eukaryotic Membrane Proteins for NMR Studies of Interactions and Dynamics.

Authors:  Igor Dikiy; Lindsay D Clark; Kevin H Gardner; Daniel M Rosenbaum
Journal:  Methods Enzymol       Date:  2018-12-18       Impact factor: 1.600

2.  Production and Preparation of Isotopically Labeled Human Membrane Proteins in Pichia pastoris for Fast-MAS-NMR Analyses.

Authors:  Lina Barret; Tobias Schubeis; Valérie Kugler; Lucile Guyot; Guido Pintacuda; Renaud Wagner
Journal:  Methods Mol Biol       Date:  2022

Review 3.  Methyl-Based NMR Spectroscopy Methods for Uncovering Structural Dynamics in Large Proteins and Protein Complexes.

Authors:  Zachary K Boswell; Michael P Latham
Journal:  Biochemistry       Date:  2018-10-26       Impact factor: 3.162

4.  Production of a Human Histamine Receptor for NMR Spectroscopy in Aqueous Solutions.

Authors:  Emma Mulry; Arka Prabha Ray; Matthew T Eddy
Journal:  Biomolecules       Date:  2021-04-24

5.  Codon Harmonization of a Kir3.1-KirBac1.3 Chimera for Structural Study Optimization.

Authors:  Evan van Aalst; Maryam Yekefallah; Anil K Mehta; Isaac Eason; Benjamin Wylie
Journal:  Biomolecules       Date:  2020-03-10

6.  Improved Protocol for the Production of the Low-Expression Eukaryotic Membrane Protein Human Aquaporin 2 in Pichia pastoris for Solid-State NMR.

Authors:  Rachel Munro; Jeffrey de Vlugt; Vladimir Ladizhansky; Leonid S Brown
Journal:  Biomolecules       Date:  2020-03-11

7.  The transient expression of recombinant proteins in plant cell packs facilitates stable isotope labelling for NMR spectroscopy.

Authors:  Patrick Opdensteinen; Laura E Sperl; Mariam Mohamadi; Nicole Kündgen-Redding; Franz Hagn; Johannes Felix Buyel
Journal:  Plant Biotechnol J       Date:  2022-07-19       Impact factor: 13.263

8.  Local Deuteration Enables NMR Observation of Methyl Groups in Proteins from Eukaryotic and Cell-Free Expression Systems.

Authors:  Abhinav Dubey; Nikolay Stoyanov; Thibault Viennet; Sandeep Chhabra; Shantha Elter; Jan Borggräfe; Aldino Viegas; Radosław P Nowak; Nikola Burdzhiev; Ognyan Petrov; Eric S Fischer; Manuel Etzkorn; Vladimir Gelev; Haribabu Arthanari
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-06       Impact factor: 15.336

  8 in total

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