Literature DB >> 29285518

Accounting for reconstruction kernel-induced variability in CT radiomic features using noise power spectra.

Muhammad Shafiq-Ul-Hassan1,2, Geoffrey G Zhang1,2, Dylan C Hunt2, Kujtim Latifi1,2, Ghanim Ullah1, Robert J Gillies2, Eduardo G Moros1,2.   

Abstract

Large variability in computed tomography (CT) radiomics feature values due to CT imaging parameters can have subsequent implications on the prognostic or predictive significance of these features. Here, we investigated the impact of pitch, dose, and reconstruction kernel on CT radiomic features. Moreover, we introduced correction factors to reduce feature variability introduced by reconstruction kernels. The credence cartridge radiomics and American College of Radiology (ACR) phantoms were scanned on five different scanners. ACR phantom was used for 3-D noise power spectrum (NPS) measurements to quantify correlated noise. The coefficient of variation (COV) was used as the variability assessment metric. The variability in texture features due to different kernels was reduced by applying the NPS peak frequency and region of interest (ROI) maximum intensity as correction factors. Most texture features were dose independent but were strongly kernel dependent, which is demonstrated by a significant shift in NPS peak frequency among kernels. Percentage improvement in robustness was calculated for each feature from original and corrected %COV values. Percentage improvements in robustness of 19 features were in the range of 30% to 78% after corrections. We show that NPS peak frequency and ROI maximum intensity can be used as correction factors to reduce variability in CT texture feature values due to reconstruction kernels.

Keywords:  computed tomography; noise power spectrum; peak frequency; pitch; radiation dose; radiomics; reconstruction kernel

Year:  2017        PMID: 29285518      PMCID: PMC5729963          DOI: 10.1117/1.JMI.5.1.011013

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  34 in total

1.  On the impact of smoothing and noise on robustness of CT and CBCT radiomics features for patients with head and neck cancers.

Authors:  Hassan Bagher-Ebadian; Farzan Siddiqui; Chang Liu; Benjamin Movsas; Indrin J Chetty
Journal:  Med Phys       Date:  2017-04-17       Impact factor: 4.071

2.  A simple approach to measure computed tomography (CT) modulation transfer function (MTF) and noise-power spectrum (NPS) using the American College of Radiology (ACR) accreditation phantom.

Authors:  Saul N Friedman; George S K Fung; Jeffrey H Siewerdsen; Benjamin M W Tsui
Journal:  Med Phys       Date:  2013-05       Impact factor: 4.071

3.  Reproducibility and Prognosis of Quantitative Features Extracted from CT Images.

Authors:  Yoganand Balagurunathan; Yuhua Gu; Hua Wang; Virendra Kumar; Olya Grove; Sam Hawkins; Jongphil Kim; Dmitry B Goldgof; Lawrence O Hall; Robert A Gatenby; Robert J Gillies
Journal:  Transl Oncol       Date:  2014-02-01       Impact factor: 4.243

4.  Are pretreatment 18F-FDG PET tumor textural features in non-small cell lung cancer associated with response and survival after chemoradiotherapy?

Authors:  Gary J R Cook; Connie Yip; Muhammad Siddique; Vicky Goh; Sugama Chicklore; Arunabha Roy; Paul Marsden; Shahreen Ahmad; David Landau
Journal:  J Nucl Med       Date:  2012-11-30       Impact factor: 10.057

5.  Can radiomics features be reproducibly measured from CBCT images for patients with non-small cell lung cancer?

Authors:  Xenia Fave; Dennis Mackin; Jinzhong Yang; Joy Zhang; David Fried; Peter Balter; David Followill; Daniel Gomez; A Kyle Jones; Francesco Stingo; Jonas Fontenot; Laurence Court
Journal:  Med Phys       Date:  2015-12       Impact factor: 4.071

6.  Coregistered FDG PET/CT-based textural characterization of head and neck cancer for radiation treatment planning.

Authors:  Huan Yu; Curtis Caldwell; Katherine Mah; Daniel Mozeg
Journal:  IEEE Trans Med Imaging       Date:  2009-03       Impact factor: 10.048

7.  Effects of contrast-enhancement, reconstruction slice thickness and convolution kernel on the diagnostic performance of radiomics signature in solitary pulmonary nodule.

Authors:  Lan He; Yanqi Huang; Zelan Ma; Cuishan Liang; Changhong Liang; Zaiyi Liu
Journal:  Sci Rep       Date:  2016-10-10       Impact factor: 4.379

8.  Impact of Reconstruction Algorithms on CT Radiomic Features of Pulmonary Tumors: Analysis of Intra- and Inter-Reader Variability and Inter-Reconstruction Algorithm Variability.

Authors:  Hyungjin Kim; Chang Min Park; Myunghee Lee; Sang Joon Park; Yong Sub Song; Jong Hyuk Lee; Eui Jin Hwang; Jin Mo Goo
Journal:  PLoS One       Date:  2016-10-14       Impact factor: 3.240

9.  Variability in CT lung-nodule quantification: Effects of dose reduction and reconstruction methods on density and texture based features.

Authors:  P Lo; S Young; H J Kim; M S Brown; M F McNitt-Gray
Journal:  Med Phys       Date:  2016-08       Impact factor: 4.071

10.  Variability of Image Features Computed from Conventional and Respiratory-Gated PET/CT Images of Lung Cancer.

Authors:  Jasmine A Oliver; Mikalai Budzevich; Geoffrey G Zhang; Thomas J Dilling; Kujtim Latifi; Eduardo G Moros
Journal:  Transl Oncol       Date:  2015-12       Impact factor: 4.243

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  17 in total

1.  Matching and Homogenizing Convolution Kernels for Quantitative Studies in Computed Tomography.

Authors:  Dennis Mackin; Rachel Ger; Skylar Gay; Cristina Dodge; Lifei Zhang; Jinzhong Yang; Aaron Kyle Jones; Laurence Court
Journal:  Invest Radiol       Date:  2019-05       Impact factor: 6.016

2.  Systematic analysis of bias and variability of texture measurements in computed tomography.

Authors:  Marthony Robins; Justin Solomon; Jocelyn Hoye; Ehsan Abadi; Daniele Marin; Ehsan Samei
Journal:  J Med Imaging (Bellingham)       Date:  2019-07-12

3.  Stable and discriminating radiomic predictor of recurrence in early stage non-small cell lung cancer: Multi-site study.

Authors:  Mohammadhadi Khorrami; Kaustav Bera; Patrick Leo; Pranjal Vaidya; Pradnya Patil; Rajat Thawani; Priya Velu; Prabhakar Rajiah; Mehdi Alilou; Humberto Choi; Michael D Feldman; Robert C Gilkeson; Philip Linden; Pingfu Fu; Harvey Pass; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Lung Cancer       Date:  2020-02-26       Impact factor: 5.705

4.  Influence of Radiation Dose, Photon Energy, and Reconstruction Kernel on rho/z Analysis in Spectral Computer Tomography: A Phantom Study.

Authors:  Vasiliki Chatzaraki; Alessandra Bolsi; Rahel A Kubik-Huch; Bernhard Schmidt; Antony John Lomax; Damien C Weber; Michael Thali; Tilo Niemann
Journal:  In Vivo       Date:  2022 Mar-Apr       Impact factor: 2.155

5.  Distinguishing granulomas from adenocarcinomas by integrating stable and discriminating radiomic features on non-contrast computed tomography scans.

Authors:  Mohammadhadi Khorrami; Kaustav Bera; Rajat Thawani; Prabhakar Rajiah; Amit Gupta; Pingfu Fu; Philip Linden; Nathan Pennell; Frank Jacono; Robert C Gilkeson; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Eur J Cancer       Date:  2021-03-17       Impact factor: 9.162

6.  Impact of CT convolution kernel on robustness of radiomic features for different lung diseases and tissue types.

Authors:  Sarah Denzler; Diem Vuong; Marta Bogowicz; Matea Pavic; Thomas Frauenfelder; Sandra Thierstein; Eric Innocents Eboulet; Britta Maurer; Janine Schniering; Hubert Szymon Gabryś; Isabelle Schmitt-Opitz; Miklos Pless; Robert Foerster; Matthias Guckenberger; Stephanie Tanadini-Lang
Journal:  Br J Radiol       Date:  2021-02-05       Impact factor: 3.039

7.  Standardization of histogram- and GLCM-based radiomics in the presence of blur and noise.

Authors:  Grace Jianan Gang; Radhika Deshpande; Joseph Webster Stayman
Journal:  Phys Med Biol       Date:  2021-03-15       Impact factor: 4.174

8.  Reproducibility of lung nodule radiomic features: Multivariable and univariable investigations that account for interactions between CT acquisition and reconstruction parameters.

Authors:  Nastaran Emaminejad; Muhammad Wasil Wahi-Anwar; Grace Hyun J Kim; William Hsu; Matthew Brown; Michael McNitt-Gray
Journal:  Med Phys       Date:  2021-04-13       Impact factor: 4.506

9.  Prediction of Human Papillomavirus (HPV) Association of Oropharyngeal Cancer (OPC) Using Radiomics: The Impact of the Variation of CT Scanner.

Authors:  Reza Reiazi; Colin Arrowsmith; Mattea Welch; Farnoosh Abbas-Aghababazadeh; Christopher Eeles; Tony Tadic; Andrew J Hope; Scott V Bratman; Benjamin Haibe-Kains
Journal:  Cancers (Basel)       Date:  2021-05-08       Impact factor: 6.639

Review 10.  Radiogenomics in brain, breast, and lung cancer: opportunities and challenges.

Authors:  Apurva Singh; Rhea Chitalia; Despina Kontos
Journal:  J Med Imaging (Bellingham)       Date:  2021-06-18
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