Literature DB >> 33721845

Standardization of histogram- and GLCM-based radiomics in the presence of blur and noise.

Grace Jianan Gang1, Radhika Deshpande2, Joseph Webster Stayman3.   

Abstract

Radiomics have been extensively investigated as quantitative biomarkers that can enhance the utility of imaging studies and aid the clinical decision making process. A major challenge to the clinical translation of radiomics is their variability as a result of different imaging and reconstruction protocols. In this work, we present a novel radiomics standardization framework capable of modeling and recovering the underlying radiomic feature in images that have been corrupted by the effects of spatial resolution and noise. We focus on two classes of radiomics based on pixel value distributions - i.e., histograms and gray-level co-occurrence matrices. We developed a model that predicts these distributions in the presence of system blur and noise, and used that model to invert these physical effects and recover the underlying distributions. Specifically, the effect of blur on histogram and GLCM is highly image-dependent, while additive noise convolves the histogram/GLCM of the noiseless image with those of the noise. The recovery method therefore consists of two deconvolution operations: the first in the image domain to remove the effect of system blur, the second in the histogram/GLCM domain to remove the effect of noise. The performance of the proposed recovery strategy was investigated using a set of texture phantoms and an emulated CT imaging chain with a range of realistic blur and noise levels. The proposed method was able to obtain histogram and GLCM estimates that closely resemble the ground truth. The method performed well across imaging conditions and significantly lowered the variability associated with different imaging protocols. This improvement also translated to better classification accuracy, where recovered radiomic values results in greater separation of radiomic clusters for two different texture phantoms as compared to values derived from the original blurred and noisy images. In summary, the novel radiomics standardization framework demonstrates high potential for mitigating radiomic variability as a result of the imaging system and can potentially be integrated as a preprocessing step towards more robust and reproducible radiomic models.
© 2021 Institute of Physics and Engineering in Medicine.

Entities:  

Keywords:  cascaded systems analysis; computer aided diagnosis; image biomarker estimation; radiomics harmonization; radiomics recovery

Year:  2021        PMID: 33721845      PMCID: PMC8607458          DOI: 10.1088/1361-6560/abeea5

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   4.174


  29 in total

1.  Cascaded systems analysis of the 3D noise transfer characteristics of flat-panel cone-beam CT.

Authors:  Daniel J Tward; Jeffrey H Siewerdsen
Journal:  Med Phys       Date:  2008-12       Impact factor: 4.071

2.  Cascaded systems analysis of noise and detectability in dual-energy cone-beam CT.

Authors:  Grace J Gang; Wojciech Zbijewski; J Webster Stayman; Jeffrey H Siewerdsen
Journal:  Med Phys       Date:  2012-08       Impact factor: 4.071

3.  Matching and Homogenizing Convolution Kernels for Quantitative Studies in Computed Tomography.

Authors:  Dennis Mackin; Rachel Ger; Skylar Gay; Cristina Dodge; Lifei Zhang; Jinzhong Yang; Aaron Kyle Jones; Laurence Court
Journal:  Invest Radiol       Date:  2019-05       Impact factor: 6.016

4.  A computer-aided diagnosis system for quantitative scoring of extent of lung fibrosis in scleroderma patients.

Authors:  H G Kim; D P Tashkin; P J Clements; G Li; M S Brown; R Elashoff; D W Gjertson; F Abtin; D A Lynch; D C Strollo; J G Goldin
Journal:  Clin Exp Rheumatol       Date:  2010-11-03       Impact factor: 4.473

5.  Influence of gray level discretization on radiomic feature stability for different CT scanners, tube currents and slice thicknesses: a comprehensive phantom study.

Authors:  Ruben T H M Larue; Janna E van Timmeren; Evelyn E C de Jong; Giacomo Feliciani; Ralph T H Leijenaar; Wendy M J Schreurs; Meindert N Sosef; Frank H P J Raat; Frans H R van der Zande; Marco Das; Wouter van Elmpt; Philippe Lambin
Journal:  Acta Oncol       Date:  2017-09-08       Impact factor: 4.089

6.  Accounting for reconstruction kernel-induced variability in CT radiomic features using noise power spectra.

Authors:  Muhammad Shafiq-Ul-Hassan; Geoffrey G Zhang; Dylan C Hunt; Kujtim Latifi; Ghanim Ullah; Robert J Gillies; Eduardo G Moros
Journal:  J Med Imaging (Bellingham)       Date:  2017-12-14

7.  Analysis of Fourier-domain task-based detectability index in tomosynthesis and cone-beam CT in relation to human observer performance.

Authors:  Grace J Gang; Junghoon Lee; J Webster Stayman; Daniel J Tward; W Zbijewski; Jerry L Prince; Jeffrey H Siewerdsen
Journal:  Med Phys       Date:  2011-04       Impact factor: 4.071

8.  Computational Radiomics System to Decode the Radiographic Phenotype.

Authors:  Joost J M van Griethuysen; Andriy Fedorov; Chintan Parmar; Ahmed Hosny; Nicole Aucoin; Vivek Narayan; Regina G H Beets-Tan; Jean-Christophe Fillion-Robin; Steve Pieper; Hugo J W L Aerts
Journal:  Cancer Res       Date:  2017-11-01       Impact factor: 12.701

Review 9.  Radiomics: the facts and the challenges of image analysis.

Authors:  Stefania Rizzo; Francesca Botta; Sara Raimondi; Daniela Origgi; Cristiana Fanciullo; Alessio Giuseppe Morganti; Massimo Bellomi
Journal:  Eur Radiol Exp       Date:  2018-11-14

10.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.

Authors:  Hugo J W L Aerts; Emmanuel Rios Velazquez; Ralph T H Leijenaar; Chintan Parmar; Patrick Grossmann; Sara Carvalho; Sara Cavalho; Johan Bussink; René Monshouwer; Benjamin Haibe-Kains; Derek Rietveld; Frank Hoebers; Michelle M Rietbergen; C René Leemans; Andre Dekker; John Quackenbush; Robert J Gillies; Philippe Lambin
Journal:  Nat Commun       Date:  2014-06-03       Impact factor: 14.919

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