Literature DB >> 30570504

Matching and Homogenizing Convolution Kernels for Quantitative Studies in Computed Tomography.

Dennis Mackin1, Rachel Ger1, Skylar Gay, Cristina Dodge2, Lifei Zhang, Jinzhong Yang, Aaron Kyle Jones3,4, Laurence Court.   

Abstract

The sharpness of the kernels used for image reconstruction in computed tomography affects the values of the quantitative image features. We sought to identify the kernels that produce similar feature values to enable a more effective comparison of images produced using scanners from different manufactures. We also investigated a new image filter designed to change the kernel-related component of the frequency spectrum of a postreconstruction image from that of the initial kernel to that of a preferred kernel. A radiomics texture phantom was imaged using scanners from GE, Philips, Siemens, and Toshiba. Images were reconstructed multiple times, varying the kernel from smooth to sharp. The phantom comprised 10 cartridges of various textures. A semiautomated method was used to produce 8 × 2 × 2 cm regions of interest for each cartridge and for all scans. For each region of interest, 38 radiomics features from the categories intensity direct (n = 12), gray-level co-occurrence matrix (n = 21), and neighborhood gray-tone difference matrix (n = 5) were extracted. We then calculated the fractional differences of the features from those of the baseline kernel (GE Standard). To gauge the importance of the differences, we scaled them by the coefficient of variation of the same feature from a cohort of patients with non-small cell lung cancer. The noise power spectra for each kernel were estimated from the phantom's solid acrylic cartridge, and kernel-homogenization filters were developed from these estimates. The Philips C, Siemens B30f, and Toshiba FC24 kernels produced feature values most similar to GE Standard. The kernel homogenization filters reduced the median differences from baseline to less than 1 coefficient of variation in the patient population for all of the GE, Philips, and Siemens kernels except for GE Edge and Toshiba kernels. For prospective computed tomographic radiomics studies, the scanning protocol should specify kernels that have been shown to produce similar feature values. For retrospective studies, kernel homogenization filters can be designed and applied to reduce the kernel-related differences in the feature values.

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Year:  2019        PMID: 30570504      PMCID: PMC6449212          DOI: 10.1097/RLI.0000000000000540

Source DB:  PubMed          Journal:  Invest Radiol        ISSN: 0020-9996            Impact factor:   6.016


  26 in total

1.  Preliminary investigation into sources of uncertainty in quantitative imaging features.

Authors:  Xenia Fave; Molly Cook; Amy Frederick; Lifei Zhang; Jinzhong Yang; David Fried; Francesco Stingo; Laurence Court
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Review 2.  Recent technological advances in computed tomography and the clinical impact therein.

Authors:  Val M Runge; Herman Marquez; Gustav Andreisek; Anton Valavanis; Hatem Alkadhi
Journal:  Invest Radiol       Date:  2015-02       Impact factor: 6.016

3.  Quantitative comparison of noise texture across CT scanners from different manufacturers.

Authors:  Justin B Solomon; Olav Christianson; Ehsan Samei
Journal:  Med Phys       Date:  2012-10       Impact factor: 4.071

4.  Radiomics of CT Features May Be Nonreproducible and Redundant: Influence of CT Acquisition Parameters.

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Journal:  Radiology       Date:  2018-04-24       Impact factor: 11.105

5.  Intrinsic dependencies of CT radiomic features on voxel size and number of gray levels.

Authors:  Muhammad Shafiq-Ul-Hassan; Geoffrey G Zhang; Kujtim Latifi; Ghanim Ullah; Dylan C Hunt; Yoganand Balagurunathan; Mahmoud Abrahem Abdalah; Matthew B Schabath; Dmitry G Goldgof; Dennis Mackin; Laurence Edward Court; Robert James Gillies; Eduardo Gerardo Moros
Journal:  Med Phys       Date:  2017-03       Impact factor: 4.071

6.  Precision of quantitative computed tomography texture analysis using image filtering: A phantom study for scanner variability.

Authors:  Koichiro Yasaka; Hiroyuki Akai; Dennis Mackin; Laurence Court; Eduardo Moros; Kuni Ohtomo; Shigeru Kiryu
Journal:  Medicine (Baltimore)       Date:  2017-05       Impact factor: 1.889

7.  Effect of tube current on computed tomography radiomic features.

Authors:  Dennis Mackin; Rachel Ger; Cristina Dodge; Xenia Fave; Pai-Chun Chi; Lifei Zhang; Jinzhong Yang; Steve Bache; Charles Dodge; A Kyle Jones; Laurence Court
Journal:  Sci Rep       Date:  2018-02-05       Impact factor: 4.379

8.  Harmonizing the pixel size in retrospective computed tomography radiomics studies.

Authors:  Dennis Mackin; Xenia Fave; Lifei Zhang; Jinzhong Yang; A Kyle Jones; Chaan S Ng; Laurence Court
Journal:  PLoS One       Date:  2017-09-21       Impact factor: 3.240

Review 9.  Quantitative radiomics studies for tissue characterization: a review of technology and methodological procedures.

Authors:  Ruben T H M Larue; Gilles Defraene; Dirk De Ruysscher; Philippe Lambin; Wouter van Elmpt
Journal:  Br J Radiol       Date:  2016-12-12       Impact factor: 3.039

10.  Reproducibility of radiomics for deciphering tumor phenotype with imaging.

Authors:  Binsheng Zhao; Yongqiang Tan; Wei-Yann Tsai; Jing Qi; Chuanmiao Xie; Lin Lu; Lawrence H Schwartz
Journal:  Sci Rep       Date:  2016-03-24       Impact factor: 4.379

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  9 in total

1.  Harmonization of in-plane resolution in CT using multiple reconstructions from single acquisitions.

Authors:  Gonzalo Vegas-Sánchez-Ferrero; Gabriel Ramos-Llordén; Raúl San José Estépar
Journal:  Med Phys       Date:  2021-09-14       Impact factor: 4.071

2.  A radiomics approach for lung nodule detection in thoracic CT images based on the dynamic patterns of morphological variation.

Authors:  Fan-Ya Lin; Yeun-Chung Chang; Hsuan-Yu Huang; Chia-Chen Li; Yi-Chang Chen; Chung-Ming Chen
Journal:  Eur Radiol       Date:  2022-01-12       Impact factor: 5.315

3.  Impact of CT convolution kernel on robustness of radiomic features for different lung diseases and tissue types.

Authors:  Sarah Denzler; Diem Vuong; Marta Bogowicz; Matea Pavic; Thomas Frauenfelder; Sandra Thierstein; Eric Innocents Eboulet; Britta Maurer; Janine Schniering; Hubert Szymon Gabryś; Isabelle Schmitt-Opitz; Miklos Pless; Robert Foerster; Matthias Guckenberger; Stephanie Tanadini-Lang
Journal:  Br J Radiol       Date:  2021-02-05       Impact factor: 3.039

4.  Correction for Systematic Bias in Radiomics Measurements Due to Variation in Imaging Protocols.

Authors:  Jocelyn Hoye; Taylor Smith; Ehsan Abadi; Justin B Solomon; Ehsan Samei
Journal:  Acad Radiol       Date:  2021-06-13       Impact factor: 5.482

5.  Standardization of histogram- and GLCM-based radiomics in the presence of blur and noise.

Authors:  Grace Jianan Gang; Radhika Deshpande; Joseph Webster Stayman
Journal:  Phys Med Biol       Date:  2021-03-15       Impact factor: 4.174

6.  Minimizing acquisition-related radiomics variability by image resampling and batch effect correction to allow for large-scale data analysis.

Authors:  Marta Ligero; Olivia Jordi-Ollero; Kinga Bernatowicz; Alonso Garcia-Ruiz; Eric Delgado-Muñoz; David Leiva; Richard Mast; Cristina Suarez; Roser Sala-Llonch; Nahum Calvo; Manuel Escobar; Arturo Navarro-Martin; Guillermo Villacampa; Rodrigo Dienstmann; Raquel Perez-Lopez
Journal:  Eur Radiol       Date:  2020-09-09       Impact factor: 5.315

7.  Repeatability and Reproducibility of Computed Tomography Radiomics for Pulmonary Nodules: A Multicenter Phantom Study.

Authors:  Xueqing Peng; Shuyi Yang; Lingxiao Zhou; Yu Mei; Lili Shi; Rengyin Zhang; Fei Shan; Lei Liu
Journal:  Invest Radiol       Date:  2022-04-01       Impact factor: 10.065

8.  Influence of a Deep Learning Noise Reduction on the CT Values, Image Noise and Characterization of Kidney and Ureter Stones.

Authors:  Andrea Steuwe; Birte Valentin; Oliver T Bethge; Alexandra Ljimani; Günter Niegisch; Gerald Antoch; Joel Aissa
Journal:  Diagnostics (Basel)       Date:  2022-07-05

9.  Computed tomographic assessment of retrograde urohydropropulsion in male dogs and prediction of stone composition using Hounsfield unit in dogs and cats.

Authors:  Aurélie Bruwier; Benjamin Godart; Laure Gatel; Dimitri Leperlier; Anne-Sophie Bedu
Journal:  J Vet Sci       Date:  2022-07-15       Impact factor: 1.603

  9 in total

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