| Literature DB >> 28993814 |
S Barral1, C Habeck2, E Gazes2, P L De Jager3, D A Bennett4, Y Stern1,2.
Abstract
Cognition is under strong genetic control, yet the specific genes are unknown. To investigate genetic influences on specific cognitive domains, 153 cognitive healthy subjects of European ancestry from the Reference Abilities Study (RANN) were genotyped for 1,160 variants within 446 neuropsychiatric genes. Adjusted linear regression models evaluated the association between the genetic variants and four reference abilities, which capture variance in age-related cognitive function (Vocabulary, Episodic Memory, Perceptual Speed, and Reasoning). 159 variants nominally significant in the RANN cohort were then re-evaluated in an independent cohort of 868 cognitive healthy subjects from the Religious Orders Study and Rush Memory Aging Project. Meta-analysis yielded a Bonferroni adjusted statistically significant association between perceptual speed and a variant located in the promoter of the dopamine receptor D4 gene, rs3756450 (β=0.23, SE=0.05, P meta =2.3 × 10-5). Our data suggest that genetic variation in a dopamine pathway gene influences perceptual speed performance in cognitively healthy individuals.Entities:
Year: 2017 PMID: 28993814 PMCID: PMC5630172 DOI: 10.1016/j.trci.2017.03.004
Source DB: PubMed Journal: Alzheimers Dement (N Y) ISSN: 2352-8737
Characteristics of the study cohorts
| Variable | RANN | ROSMAP |
|---|---|---|
| Number of individuals | 153 | 939 |
| % Female | 50 | 70 |
| Age, average ± SD | 54 ± 17 | 85 ± 7 |
| Education, average ± SD | 17 ± 2 | 17 ± 4 |
Abbreviations: RANN, Reference Ability Neural Network Study, Columbia University; ROSMAP, Religious Order and Rush Aging Project cohorts; SD, standard deviations.
Meta-analysis of RANN and ROSMAP cohorts
| Reference abilities | Gene | SNP | RANN | ROSMAP_b1 | ROSMAP_b2 | Meta-analysis | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A1 | β | SE | A1 | β | SE | A1 | β | SE | β | SE | Dir. | |||||||
| Episodic memory | ||||||||||||||||||
| Episodic memory | GRIN2B | rs2192977 | A | 0.29 | 0.10 | .004 | T | −0.07 | 0.03 | .027 | T | 0.02 | 0.05 | .696 | 0.06 | 0.02 | .014 | ++− |
| Episodic memory | GRIN2B | rs12829455 | A | −0.23 | 0.10 | .029 | G | 0.03 | 0.03 | .445 | G | 0.06 | 0.05 | .210 | −0.05 | 0.02 | .045 | −−− |
| Reasoning | SLC6A11 | rs2581206 | C | −0.17 | 0.08 | .032 | A | 0.07 | 0.08 | .352 | A | 0.03 | 0.15 | .833 | 0.11 | 0.05 | .040 | +++ |
| Reasoning | SLC6A11 | rs1881354 | A | −0.16 | 0.08 | .045 | G | 0.09 | 0.08 | .271 | G | 0.03 | 0.15 | .861 | −0.11 | 0.05 | .033 | −−− |
| Reasoning | CDKL3 | rs326626 | G | −0.23 | 0.11 | .043 | C | 0.10 | 0.13 | .447 | C | 0.38 | 0.25 | .136 | 0.20 | 0.08 | .014 | +++ |
| Reasoning | NR3C1 | rs6877893 | G | −0.18 | 0.07 | .017 | G | −0.10 | 0.07 | .155 | G | 0.03 | 0.15 | .831 | 0.12 | 0.05 | .009 | ++− |
| Reasoning | rs11767557 | |||||||||||||||||
| Reasoning | ADRA1A | rs2644627 | C | −0.19 | 0.08 | .016 | G | 0.07 | 0.08 | .361 | G | 0.02 | 0.15 | .886 | −0.12 | 0.05 | .028 | −−− |
| Reasoning | NTRK2 | rs11795386 | T | −0.24 | 0.09 | .013 | C | 0.11 | 0.10 | .267 | C | −0.18 | 0.20 | .376 | −0.15 | 0.06 | .022 | −−+ |
| Reasoning | CH25H | rs11203006 | G | 0.23 | 0.12 | .046 | A | −0.10 | 0.11 | .398 | A | −0.09 | 0.19 | .634 | −0.15 | 0.07 | .046 | −−− |
| Reasoning | MAPT | rs8079215 | C | 0.19 | 0.09 | .045 | T | −0.11 | 0.08 | .212 | T | 0.14 | 0.18 | .454 | −0.12 | 0.06 | .039 | −−+ |
| Reasoning | GALR1 | rs2717164 | G | −0.39 | 0.16 | .020 | T | 0.18 | 0.30 | .553 | T | 1.04 | 0.68 | .126 | 0.37 | 0.14 | .007 | +++ |
| Speed | GABRA4 | rs1398176 | T | −0.33 | 0.10 | .002 | C | 0.05 | 0.06 | .433 | C | −0.01 | 0.12 | .905 | −0.10 | 0.05 | .029 | −−+ |
| Speed | GABRB1 | rs971353 | C | −0.19 | 0.09 | .035 | T | 0.13 | 0.05 | .008 | T | 0.03 | 0.10 | .765 | 0.13 | 0.04 | .002 | +++ |
| Speed | RP1L1 | rs4841401 | C | −0.22 | 0.07 | .004 | G | 0.02 | 0.05 | .626 | G | 0.19 | 0.09 | .034 | −0.10 | 0.04 | .005 | −−− |
| Speed | CHRNA5 | rs7180002 | T | 0.17 | 0.07 | .021 | T | 0.05 | 0.05 | .262 | T | 0.19 | 0.08 | .023 | −0.11 | 0.04 | .002 | −−− |
| Speed | SLC6A2 | rs36008 | A | 0.41 | 0.20 | .044 | T | −0.18 | 0.15 | .234 | T | −0.17 | 0.30 | .565 | 0.25 | 0.11 | .025 | +++ |
| Speed | GALR1 | rs2717164 | G | −0.33 | 0.15 | .033 | T | 0.16 | 0.17 | .341 | T | 0.63 | 0.38 | .100 | 0.29 | 0.11 | .008 | +++ |
| Speed | GRIK1 | rs457474 | C | −0.36 | 0.10 | 3.2 × 10−4 | G | 0.05 | 0.06 | .354 | G | 0.16 | 0.11 | .162 | −0.14 | 0.05 | .003 | −−− |
| Vocabulary | CREB1 | rs2551640 | G | −0.19 | 0.08 | .013 | G | −0.05 | 0.05 | .298 | G | −0.07 | 0.08 | .396 | 0.09 | 0.04 | .023 | +++ |
| Vocabulary | LPCAT1 | rs3756450 | G | −0.28 | 0.12 | .021 | A | 0.10 | 0.07 | .128 | A | 0.02 | 0.11 | .871 | 0.12 | 0.05 | .028 | +++ |
| Vocabulary | EPHA1 | rs11767557 | C | −0.20 | 0.10 | .045 | T | 0.05 | 0.05 | .314 | T | 0.31 | 0.10 | .002 | 0.12 | 0.04 | .004 | +++ |
| Vocabulary | ||||||||||||||||||
| Vocabulary | TPH2 | rs1352250 | A | 0.19 | 0.08 | .017 | G | −0.05 | 0.04 | .242 | G | −0.02 | 0.08 | .802 | 0.07 | 0.03 | .036 | +++ |
| Vocabulary | GABRB3 | rs2114217 | T | −0.21 | 0.10 | .030 | A | 0.08 | 0.06 | .196 | A | 0.19 | 0.12 | .103 | 0.13 | 0.05 | .008 | +++ |
| Vocabulary | CRHR1 | rs12938031 | G | −0.23 | 0.08 | .006 | G | −0.04 | 0.04 | .337 | G | −0.03 | 0.08 | .695 | 0.07 | 0.03 | .032 | +++ |
Abbreviations: RANN, Reference Ability Neural Network; ROSMAP, Religious Orders Study and Rush Memory and Aging Project; SE, standard error; SNP, single-nucleotide polymorphism.
Only SNPs reaching nominal significance (P ≤ .05) are shown (ROSMAP_b1 and ROSMAP_b2 correspond to the two independent genotype batches for the cohort). Strongest SNP associations within each of the reference abilities are highlighted in bold.