Literature DB >> 24508835

Building a pipeline to discover and validate novel therapeutic targets and lead compounds for Alzheimer's disease.

David A Bennett1, Lei Yu2, Philip L De Jager3.   

Abstract

Cognitive decline, Alzheimer's disease (AD) and other causes are major public health problems worldwide. With changing demographics, the number of persons with dementia will increase rapidly. The treatment and prevention of AD and other dementias, therefore, is an urgent unmet need. There have been considerable advances in understanding the biology of many age-related disorders that cause dementia. Gains in understanding AD have led to the development of ante-mortem biomarkers of traditional neuropathology and the conduct of several phase III interventions in the amyloid-β cascade early in the disease process. Many other intervention strategies are in various stages of development. However, efforts to date have met with limited success. A recent National Institute on Aging Research Summit led to a number of requests for applications. One was to establish multi-disciplinary teams of investigators who use systems biology approaches and stem cell technology to identify a new generation of AD targets. We were recently awarded one of three such grants to build a pipeline that integrates epidemiology, systems biology, and stem cell technology to discover and validate novel therapeutic targets and lead compounds for AD treatment and prevention. Here we describe the two cohorts that provide the data and biospecimens being exploited for our pipeline and describe the available unique datasets. Second, we present evidence in support of a chronic disease model of AD that informs our choice of phenotypes as the target outcome. Third, we provide an overview of our approach. Finally, we present the details of our planned drug discovery pipeline.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Alzheimer's disease; RNAi; Small molecule screen; Systems biology; Targeted proteomics

Mesh:

Year:  2014        PMID: 24508835      PMCID: PMC4054869          DOI: 10.1016/j.bcp.2014.01.037

Source DB:  PubMed          Journal:  Biochem Pharmacol        ISSN: 0006-2952            Impact factor:   5.858


  198 in total

1.  Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum.

Authors:  Tujin Shi; Thomas L Fillmore; Xuefei Sun; Rui Zhao; Athena A Schepmoes; Mahmud Hossain; Fang Xie; Si Wu; Jong-Seo Kim; Nathan Jones; Ronald J Moore; Ljiljana Pasa-Tolić; Jacob Kagan; Karin D Rodland; Tao Liu; Keqi Tang; David G Camp; Richard D Smith; Wei-Jun Qian
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

2.  Estimation of the mediation effect with a binary mediator.

Authors:  Yan Li; Julie A Schneider; David A Bennett
Journal:  Stat Med       Date:  2007-08-15       Impact factor: 2.373

3.  Cognitive impairment, decline and fluctuations in older community-dwelling subjects with Lewy bodies.

Authors:  J A Schneider; Z Arvanitakis; L Yu; P A Boyle; S E Leurgans; D A Bennett
Journal:  Brain       Date:  2012-10       Impact factor: 13.501

4.  Co-morbidity of TDP-43 proteinopathy in Lewy body related diseases.

Authors:  Hanae Nakashima-Yasuda; Kunihiro Uryu; John Robinson; Sharon X Xie; Howard Hurtig; John E Duda; Steven E Arnold; Andrew Siderowf; Murray Grossman; James B Leverenz; Randy Woltjer; Oscar L Lopez; Ronald Hamilton; Debby W Tsuang; Douglas Galasko; Eliezer Masliah; Jeffrey Kaye; Christopher M Clark; Thomas J Montine; Virginia M-Y Lee; John Q Trojanowski
Journal:  Acta Neuropathol       Date:  2007-07-25       Impact factor: 17.088

Review 5.  Preclinical Alzheimer disease-the challenges ahead.

Authors:  Reisa A Sperling; Jason Karlawish; Keith A Johnson
Journal:  Nat Rev Neurol       Date:  2012-11-27       Impact factor: 42.937

6.  A coding variant in CR1 interacts with APOE-ε4 to influence cognitive decline.

Authors:  Brendan T Keenan; Joshua M Shulman; Lori B Chibnik; Towfique Raj; Dong Tran; Mert R Sabuncu; April N Allen; Jason J Corneveaux; John A Hardy; Matthew J Huentelman; Cynthia A Lemere; Amanda J Myers; Anne Nicholson-Weller; Eric M Reiman; Denis A Evans; David A Bennett; Philip L De Jager
Journal:  Hum Mol Genet       Date:  2012-02-17       Impact factor: 6.150

7.  Functional links between Aβ toxicity, endocytic trafficking, and Alzheimer's disease risk factors in yeast.

Authors:  Sebastian Treusch; Shusei Hamamichi; Jessica L Goodman; Kent E S Matlack; Chee Yeun Chung; Valeriya Baru; Joshua M Shulman; Antonio Parrado; Brooke J Bevis; Julie S Valastyan; Haesun Han; Malin Lindhagen-Persson; Eric M Reiman; Denis A Evans; David A Bennett; Anders Olofsson; Philip L DeJager; Rudolph E Tanzi; Kim A Caldwell; Guy A Caldwell; Susan Lindquist
Journal:  Science       Date:  2011-10-27       Impact factor: 47.728

8.  Risk Aversion is Associated with Decision Making among Community-Based Older Persons.

Authors:  Patricia A Boyle; Lei Yu; Aron S Buchman; David A Bennett
Journal:  Front Psychol       Date:  2012-06-28

9.  Soluble α-synuclein is a novel modulator of Alzheimer's disease pathophysiology.

Authors:  Megan E Larson; Mathew A Sherman; Susan Greimel; Michael Kuskowski; Julie A Schneider; David A Bennett; Sylvain E Lesné
Journal:  J Neurosci       Date:  2012-07-25       Impact factor: 6.167

10.  Associations between quantitative mobility measures derived from components of conventional mobility testing and Parkinsonian gait in older adults.

Authors:  Aron S Buchman; Sue E Leurgans; Aner Weiss; Veronique Vanderhorst; Anat Mirelman; Robert Dawe; Lisa L Barnes; Robert S Wilson; Jeffrey M Hausdorff; David A Bennett
Journal:  PLoS One       Date:  2014-01-22       Impact factor: 3.240

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  21 in total

1.  Genetics of Gene Expression in the Aging Human Brain Reveal TDP-43 Proteinopathy Pathophysiology.

Authors:  Hyun-Sik Yang; Charles C White; Hans-Ulrich Klein; Lei Yu; Christopher Gaiteri; Yiyi Ma; Daniel Felsky; Sara Mostafavi; Vladislav A Petyuk; Reisa A Sperling; Nilüfer Ertekin-Taner; Julie A Schneider; David A Bennett; Philip L De Jager
Journal:  Neuron       Date:  2020-06-10       Impact factor: 17.173

2.  Blood and brain gene expression trajectories mirror neuropathology and clinical deterioration in neurodegeneration.

Authors:  Yasser Iturria-Medina; Ahmed F Khan; Quadri Adewale; Amir H Shirazi
Journal:  Brain       Date:  2020-02-01       Impact factor: 13.501

3.  Evaluation of TDP-43 proteinopathy and hippocampal sclerosis in relation to APOE ε4 haplotype status: a community-based cohort study.

Authors:  Hyun-Sik Yang; Lei Yu; Charles C White; Lori B Chibnik; Jasmeer P Chhatwal; Reisa A Sperling; David A Bennett; Julie A Schneider; Philip L De Jager
Journal:  Lancet Neurol       Date:  2018-08-06       Impact factor: 44.182

Review 4.  Recent Advances in the Systems Biology of Aging.

Authors:  Mark A McCormick; Daniel E L Promislow
Journal:  Antioxid Redox Signal       Date:  2017-11-20       Impact factor: 8.401

Review 5.  Exploring the nexus of Alzheimer's disease and related dementias with cancer and cancer therapies: A convening of the Alzheimer's Association & Alzheimer's Drug Discovery Foundation.

Authors:  Heather M Snyder; Tim Ahles; Stuart Calderwood; Maria C Carrillo; Honglei Chen; Chung-Chou H Chang; Suzanne Craft; Philip De Jager; Jane A Driver; Howard Fillit; David Knopman; Michael Lotze; Mary C Tierney; Suzana Petanceska; Andrew Saykin; Sudha Seshadri; Diana Shineman; Mary Ganguli
Journal:  Alzheimers Dement       Date:  2016-12-18       Impact factor: 21.566

6.  The TMEM106B locus and TDP-43 pathology in older persons without FTLD.

Authors:  Lei Yu; Philip L De Jager; Jingyun Yang; John Q Trojanowski; David A Bennett; Julie A Schneider
Journal:  Neurology       Date:  2015-02-04       Impact factor: 9.910

7.  Systems genetics identifies Hp1bp3 as a novel modulator of cognitive aging.

Authors:  Sarah M Neuner; Benjamin P Garfinkel; Lynda A Wilmott; Bogna M Ignatowska-Jankowska; Ami Citri; Joseph Orly; Lu Lu; Rupert W Overall; Megan K Mulligan; Gerd Kempermann; Robert W Williams; Kristen M S O'Connell; Catherine C Kaczorowski
Journal:  Neurobiol Aging       Date:  2016-06-17       Impact factor: 4.673

8.  Higher brain BDNF gene expression is associated with slower cognitive decline in older adults.

Authors:  Aron S Buchman; Lei Yu; Patricia A Boyle; Julie A Schneider; Philip L De Jager; David A Bennett
Journal:  Neurology       Date:  2016-01-27       Impact factor: 9.910

Review 9.  Religious Orders Study and Rush Memory and Aging Project.

Authors:  David A Bennett; Aron S Buchman; Patricia A Boyle; Lisa L Barnes; Robert S Wilson; Julie A Schneider
Journal:  J Alzheimers Dis       Date:  2018       Impact factor: 4.472

10.  Genetic architecture of subcortical brain structures in 38,851 individuals.

Authors:  Claudia L Satizabal; Hieab H H Adams; Derrek P Hibar; Charles C White; Maria J Knol; Jason L Stein; Markus Scholz; Muralidharan Sargurupremraj; Neda Jahanshad; Gennady V Roshchupkin; Albert V Smith; Joshua C Bis; Xueqiu Jian; Michelle Luciano; Edith Hofer; Alexander Teumer; Sven J van der Lee; Jingyun Yang; Lisa R Yanek; Tom V Lee; Shuo Li; Yanhui Hu; Jia Yu Koh; John D Eicher; Sylvane Desrivières; Alejandro Arias-Vasquez; Ganesh Chauhan; Lavinia Athanasiu; Miguel E Rentería; Sungeun Kim; David Hoehn; Nicola J Armstrong; Qiang Chen; Avram J Holmes; Anouk den Braber; Iwona Kloszewska; Micael Andersson; Thomas Espeseth; Oliver Grimm; Lucija Abramovic; Saud Alhusaini; Yuri Milaneschi; Martina Papmeyer; Tomas Axelsson; Stefan Ehrlich; Roberto Roiz-Santiañez; Bernd Kraemer; Asta K Håberg; Hannah J Jones; G Bruce Pike; Dan J Stein; Allison Stevens; Janita Bralten; Meike W Vernooij; Tamara B Harris; Irina Filippi; A Veronica Witte; Tulio Guadalupe; Katharina Wittfeld; Thomas H Mosley; James T Becker; Nhat Trung Doan; Saskia P Hagenaars; Yasaman Saba; Gabriel Cuellar-Partida; Najaf Amin; Saima Hilal; Kwangsik Nho; Nazanin Mirza-Schreiber; Konstantinos Arfanakis; Diane M Becker; David Ames; Aaron L Goldman; Phil H Lee; Dorret I Boomsma; Simon Lovestone; Sudheer Giddaluru; Stephanie Le Hellard; Manuel Mattheisen; Marc M Bohlken; Dalia Kasperaviciute; Lianne Schmaal; Stephen M Lawrie; Ingrid Agartz; Esther Walton; Diana Tordesillas-Gutierrez; Gareth E Davies; Jean Shin; Jonathan C Ipser; Louis N Vinke; Martine Hoogman; Tianye Jia; Ralph Burkhardt; Marieke Klein; Fabrice Crivello; Deborah Janowitz; Owen Carmichael; Unn K Haukvik; Benjamin S Aribisala; Helena Schmidt; Lachlan T Strike; Ching-Yu Cheng; Shannon L Risacher; Benno Pütz; Debra A Fleischman; Amelia A Assareh; Venkata S Mattay; Randy L Buckner; Patrizia Mecocci; Anders M Dale; Sven Cichon; Marco P Boks; Mar Matarin; Brenda W J H Penninx; Vince D Calhoun; M Mallar Chakravarty; Andre F Marquand; Christine Macare; Shahrzad Kharabian Masouleh; Jaap Oosterlaan; Philippe Amouyel; Katrin Hegenscheid; Jerome I Rotter; Andrew J Schork; David C M Liewald; Greig I de Zubicaray; Tien Yin Wong; Li Shen; Philipp G Sämann; Henry Brodaty; Joshua L Roffman; Eco J C de Geus; Magda Tsolaki; Susanne Erk; Kristel R van Eijk; Gianpiero L Cavalleri; Nic J A van der Wee; Andrew M McIntosh; Randy L Gollub; Kazima B Bulayeva; Manon Bernard; Jennifer S Richards; Jayandra J Himali; Markus Loeffler; Nanda Rommelse; Wolfgang Hoffmann; Lars T Westlye; Maria C Valdés Hernández; Narelle K Hansell; Theo G M van Erp; Christiane Wolf; John B J Kwok; Bruno Vellas; Andreas Heinz; Loes M Olde Loohuis; Norman Delanty; Beng-Choon Ho; Christopher R K Ching; Elena Shumskaya; Baljeet Singh; Albert Hofman; Dennis van der Meer; Georg Homuth; Bruce M Psaty; Mark E Bastin; Grant W Montgomery; Tatiana M Foroud; Simone Reppermund; Jouke-Jan Hottenga; Andrew Simmons; Andreas Meyer-Lindenberg; Wiepke Cahn; Christopher D Whelan; Marjolein M J van Donkelaar; Qiong Yang; Norbert Hosten; Robert C Green; Anbupalam Thalamuthu; Sebastian Mohnke; Hilleke E Hulshoff Pol; Honghuang Lin; Clifford R Jack; Peter R Schofield; Thomas W Mühleisen; Pauline Maillard; Steven G Potkin; Wei Wen; Evan Fletcher; Arthur W Toga; Oliver Gruber; Matthew Huentelman; George Davey Smith; Lenore J Launer; Lars Nyberg; Erik G Jönsson; Benedicto Crespo-Facorro; Nastassja Koen; Douglas N Greve; André G Uitterlinden; Daniel R Weinberger; Vidar M Steen; Iryna O Fedko; Nynke A Groenewold; Wiro J Niessen; Roberto Toro; Christophe Tzourio; William T Longstreth; M Kamran Ikram; Jordan W Smoller; Marie-Jose van Tol; Jessika E Sussmann; Tomas Paus; Hervé Lemaître; Matthias L Schroeter; Bernard Mazoyer; Ole A Andreassen; Florian Holsboer; Chantal Depondt; Dick J Veltman; Jessica A Turner; Zdenka Pausova; Gunter Schumann; Daan van Rooij; Srdjan Djurovic; Ian J Deary; Katie L McMahon; Bertram Müller-Myhsok; Rachel M Brouwer; Hilkka Soininen; Massimo Pandolfo; Thomas H Wassink; Joshua W Cheung; Thomas Wolfers; Jean-Luc Martinot; Marcel P Zwiers; Matthias Nauck; Ingrid Melle; Nicholas G Martin; Ryota Kanai; Eric Westman; René S Kahn; Sanjay M Sisodiya; Tonya White; Arvin Saremi; Hans van Bokhoven; Han G Brunner; Henry Völzke; Margaret J Wright; Dennis van 't Ent; Markus M Nöthen; Roel A Ophoff; Jan K Buitelaar; Guillén Fernández; Perminder S Sachdev; Marcella Rietschel; Neeltje E M van Haren; Simon E Fisher; Alexa S Beiser; Clyde Francks; Andrew J Saykin; Karen A Mather; Nina Romanczuk-Seiferth; Catharina A Hartman; Anita L DeStefano; Dirk J Heslenfeld; Michael W Weiner; Henrik Walter; Pieter J Hoekstra; Paul A Nyquist; Barbara Franke; David A Bennett; Hans J Grabe; Andrew D Johnson; Christopher Chen; Cornelia M van Duijn; Oscar L Lopez; Myriam Fornage; Joanna M Wardlaw; Reinhold Schmidt; Charles DeCarli; Philip L De Jager; Arno Villringer; Stéphanie Debette; Vilmundur Gudnason; Sarah E Medland; Joshua M Shulman; Paul M Thompson; Sudha Seshadri; M Arfan Ikram
Journal:  Nat Genet       Date:  2019-10-21       Impact factor: 38.330

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