| Literature DB >> 28883855 |
Vana Kolovou1,2, Helen Bilianou3, Vasiliki Giannakopoulou3, Petros Kalogeropoulos4, Constantinos Mihas5, Markos Kouris3, Dennis V Cokkinos1, Maria Boutsikou1, Ioannis Hoursalas1, Sophie Mavrogeni1, Niki Katsiki6, Genovefa Kolovou1.
Abstract
INTRODUCTION: Genetic factors contribute to the variation of human life span which is believed to be more profound after 85 years of age. The aim of the present study was to evaluate the frequency of 5 gene polymorphisms between nonagenarians, centenarians and average individuals.Entities:
Keywords: ADIPOQ; FOXO3A; IGFBP3; TERT; centenarians; nonagenarians; single nucleotide polymorphisms
Year: 2017 PMID: 28883855 PMCID: PMC5575223 DOI: 10.5114/aoms.2017.68942
Source DB: PubMed Journal: Arch Med Sci ISSN: 1734-1922 Impact factor: 3.318
Genotyping methodology
| Gene | SNP | Name | Primer sequences (5ʹ→3ʹ) | Ref. | Tm [°C] | PCR product [bp] | Restriction enzyme | After digestion |
|---|---|---|---|---|---|---|---|---|
| rs2736098 | p.Ala305Ala | F: ACCGTGGTTTCTGTGTGGTGTCA | – | 60 | 207 | PspOM I | 116 bp and 91 bp | |
| rs2764264 | – | F: AGGATTTTTGTGTCTGTCTTCACG | – | 55 | 202 | NlaIII | 101 bp and 101 bp | |
| rs13217795 | – | F: GGCCCTGGTAGGCACCACATACAT | – | 64 | 284 | BspHI | 193 bp and 91 bp | |
| rs2241766 | c.+45T>G | F: GCAGCTCCTAGAAGTAGACTCTGCTG | Guzman-Ornelas | 68 | 372 | BspHI | 206 bp and 166 bp | |
| rs2854744 | A-202C or | F: CCACGAGGTACACACGAATG | Deal | 58 | 463 | FspI | 241 bp and 222 bp |
Genotype frequencies between the study group and the control group
| Variable | All | Control group | Study group | ||||
|---|---|---|---|---|---|---|---|
| Gender: | |||||||
| Male | 166 | 41.0 | 75 | 50.3 | 91 | 35.5 | 0.004 |
| Female | 239 | 59.0 | 74 | 49.7 | 165 | 64.5 | |
| Genotypes: | |||||||
| | |||||||
| AA | 31 | 8.2 | 8 | 6.3 | 23 | 8.9 | 0.685 |
| AG | 154 | 40.4 | 52 | 40.6 | 103 | 40.2 | |
| GG | 196 | 51.4 | 68 | 53.1 | 130 | 50.5 | |
| | |||||||
| AA | 106 | 28.4 | 29 | 24.4 | 77 | 30.3 | 0.392 |
| AC | 188 | 50.4 | 61 | 51.3 | 127 | 50.0 | |
| CC | 79 | 21.2 | 29 | 24.4 | 50 | 19.7 | |
| | |||||||
| CC | 55 | 13.6 | 22 | 14.9 | 33 | 12.9 | 0.837 |
| CT | 191 | 47.3 | 68 | 45.9 | 123 | 48.0 | |
| TT | 158 | 39.1 | 58 | 39.2 | 100 | 39.1 | |
| | |||||||
| TT | 158 | 39.1 | 54 | 36.5 | 104 | 40.6 | 0.070 |
| TC | 222 | 55.0 | 80 | 54.1 | 142 | 55.5 | |
| CC | 24 | 5.9 | 14 | 9.5 | 10 | 3.9 | |
| | |||||||
| TT | 276 | 68.7 | 100 | 67.6 | 176 | 69.0 | 0.124 |
| TG | 115 | 28.6 | 47 | 31.7 | 70 | 27.1 | |
| GG | 11 | 2.7 | 1 | 0.7 | 10 | 3.9 | |
20 genotype analyses were missing in the control group.
Genotype frequencies in men
| Variable | Control group | Study group | |||
|---|---|---|---|---|---|
| Gender: | |||||
| Male | 75 | 100.0 | 91 | 100.0 | |
| Female | 0 | 0.0 | 0 | 0.0 | |
| Genotypes: | |||||
| | |||||
| AA | 7 | 11.1 | 8 | 8.8 | 0.890 |
| GA | 26 | 41.3 | 38 | 41.8 | |
| GG | 30 | 47.6 | 45 | 49.5 | |
| | |||||
| AA | 16 | 27.1 | 27 | 30.7 | 0.785 |
| AC | 29 | 49.2 | 44 | 50.0 | |
| CC | 14 | 23.7 | 17 | 19.3 | |
| | |||||
| CC | 12 | 16.2 | 14 | 15.6 | 0.413 |
| CT | 38 | 51.4 | 38 | 42.2 | |
| TT | 24 | 32.4 | 38 | 42.2 | |
| | |||||
| TT | 21 | 28.0 | 41 | 45.6 | 0.050 |
| CT | 47 | 62.7 | 45 | 50.0 | |
| CC | 7 | 9.3 | 4 | 4.4 | |
| | |||||
| TT | 46 | 61.3 | 61 | 67.8 | 0.291 |
| TG | 28 | 37.3 | 25 | 27.8 | |
| GG | 1 | 1.3 | 4 | 4.4 | |
Genotype frequencies in the study group according to gender
| Genotypes | Study group | ||||
|---|---|---|---|---|---|
| Gender | |||||
| Male | Female | ||||
| AA | 8 | 8.8 | 15 | 9.1 | 0.963 |
| GA | 38 | 41.8 | 66 | 40.0 | |
| GG | 45 | 49.5 | 84 | 50.9 | |
| AA | 27 | 30.7 | 50 | 30.3 | 0.998 |
| AC | 44 | 50.0 | 83 | 50.3 | |
| CC | 17 | 19.3 | 32 | 19.4 | |
| CC | 14 | 15.6 | 19 | 11.5 | 0.373 |
| CT | 38 | 42.2 | 84 | 50.9 | |
| TT | 38 | 42.2 | 62 | 37.6 | |
| TT | 41 | 45.6 | 63 | 38.2 | 0.454 |
| CT | 45 | 50.0 | 96 | 58.2 | |
| CC | 4 | 4.4 | 6 | 3.6 | |
| TT | 61 | 67.8 | 114 | 69.5 | 0.934 |
| TG | 25 | 27.8 | 44 | 26.8 | |
| GG | 4 | 4.4 | 6 | 3.7 | |
Allele frequencies among the 2 studied groups (in both genders)
| Alleles | Control group | Study group | |||
|---|---|---|---|---|---|
| A | 58 | 46.8 | 127 | 49.4 | 0.629 |
| G | 66 | 53.2 | 130 | 50.6 | |
| A | 90 | 75.6 | 204 | 80.3 | 0.302 |
| C | 29 | 24.4 | 50 | 19.7 | |
| C | 90 | 60.8 | 156 | 60.9 | 0.980 |
| T | 58 | 39.2 | 100 | 39.1 | |
| T | 134 | 90.5 | 246 | 96.1 | 0.023 |
| C | 14 | 9.5 | 10 | 3.9 | |
| T | 146 | 99.3 | 245 | 96.1 | 0.062 |
| G | 1 | 0.7 | 10 | 3.9 | |
Genotype frequencies in the study group according to age
| Genotypes | Study group | ||||
|---|---|---|---|---|---|
| Nonagenarians | Centenarians | ||||
| AA | 23 | 9.6 | 0 | 0.0 | 0.164 |
| GA | 99 | 41.3 | 5 | 29.4 | |
| GG | 118 | 49.2 | 12 | 70.6 | |
| AA | 70 | 29.5 | 7 | 41.2 | 0.597 |
| AC | 120 | 50.6 | 7 | 41.2 | |
| CC | 47 | 19.8 | 3 | 17.6 | |
| CC | 30 | 12.6 | 3 | 17.6 | 0.014 |
| CT | 110 | 46.0 | 13 | 76.5 | |
| TT | 99 | 41.4 | 1 | 5.9 | |
| TT | 103 | 43.1 | 1 | 5.9 | 0.010 |
| CT | 127 | 53.1 | 15 | 88.2 | |
| CC | 9 | 3.8 | 1 | 5.9 | |
| TT | 163 | 68.5 | 13 | 76.5 | 0.894 |
| TG | 65 | 27.3 | 4 | 23.5 | |
| GG | 10 | 4.2 | 0 | 0.0 | |
Allele frequencies in the study group according to age
| Alleles | Study group | ||||
|---|---|---|---|---|---|
| Nonagenarians | Centenarians | ||||
| A | 145 | 30.2 | 5 | 14.7 | 0.055 |
| G | 335 | 69.8 | 29 | 85.3 | |
| A | 260 | 54.9 | 21 | 61.8 | 0.434 |
| C | 214 | 45.1 | 13 | 38.2 | |
| C | 170 | 35.6 | 19 | 55.9 | 0.018 |
| T | 308 | 64.4 | 15 | 44.1 | |
| T | 333 | 69.7 | 17 | 50.0 | 0.017 |
| C | 145 | 30.3 | 17 | 50.0 | |
| T | 391 | 82.1 | 30 | 88.2 | 0.366 |
| G | 85 | 17.9 | 4 | 11.8 | |
Genotype frequencies in women
| Variable | Control group | Study group | |||
|---|---|---|---|---|---|
| Gender: | |||||
| 0 | 0.0 | 0 | 0.0 | ||
| 74 | 100.0 | 165 | 100.0 | ||
| Genotypes: | |||||
| AA | 1 | 1.6 | 15 | 9.1 | 0.132 |
| GA | 24 | 39.3 | 66 | 40.0 | |
| GG | 36 | 59.0 | 84 | 50.9 | |
| AA | 13 | 21.7 | 50 | 30.3 | 0.384 |
| AC | 32 | 53.3 | 83 | 50.3 | |
| CC | 15 | 25.0 | 32 | 19.4 | |
| CC | 10 | 13.5 | 19 | 11.5 | 0.331 |
| CT | 30 | 40.5 | 84 | 50.9 | |
| TT | 34 | 45.9 | 62 | 37.6 | |
| TT | 33 | 45.2 | 63 | 38.2 | 0.065 |
| CT | 33 | 45.2 | 96 | 58.2 | |
| CC | 7 | 9.6 | 6 | 3.6 | |
| TT | 54 | 75.0 | 114 | 69.5 | 0.283 |
| TG | 18 | 25.0 | 44 | 26.8 | |
| GG | 0 | 0.0 | 6 | 3.7 | |
Genotype frequencies in the control group according to gender
| Genotypes | Control group | ||||
|---|---|---|---|---|---|
| Gender | |||||
| Male | Female | ||||
| AA | 7 | 11.1 | 1 | 1.6 | 0.085 |
| GA | 26 | 41.3 | 24 | 39.3 | |
| GG | 30 | 47.6 | 36 | 59.0 | |
| AA | 16 | 27.1 | 13 | 21.7 | 0.785 |
| AC | 29 | 49.2 | 32 | 53.3 | |
| CC | 14 | 23.7 | 15 | 25.0 | |
| CC | 12 | 16.2 | 10 | 13.5 | 0.241 |
| CT | 38 | 51.4 | 30 | 40.5 | |
| TT | 24 | 32.4 | 34 | 45.9 | |
| TT | 21 | 28.0 | 33 | 45.2 | 0.078 |
| CT | 47 | 62.7 | 33 | 45.2 | |
| CC | 7 | 9.3 | 7 | 9.6 | |
| TT | 46 | 61.3 | 54 | 75.0 | 0.111 |
| TG | 28 | 37.3 | 18 | 25.0 | |
| GG | 1 | 1.3 | 0 | 0.0 | |