| Literature DB >> 26754433 |
Joseph Sam Kanu1, Yulu Gu2, Sun Zhi3, Mingxi Yu4, Yuping Lu5, Yetong Cong6, Yunkai Liu7, Yong Li8, Yaqin Yu9, Yi Cheng10, Yawen Liu11.
Abstract
BACKGROUND: Coronary Heart Disease (CHD) is one of the leading causes of death in the world with a projected global 82 million DALYs by 2020. Genetic and environmental factors contribute to CHD development. Here, the authors investigate the association between CHD risk and three Single Nucleotide Polymorphisms (SNPs) in the AdipoQ gene (rs3774261, rs1063537 and rs2082940); and the interaction of this association with environmental factors, in Northeast Han Chinese population.Entities:
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Year: 2016 PMID: 26754433 PMCID: PMC4709904 DOI: 10.1186/s12944-015-0173-4
Source DB: PubMed Journal: Lipids Health Dis ISSN: 1476-511X Impact factor: 3.876
Demographics and lipid profile of participants (Northeast Han Chinese)
| Variable | CHD ( | Controls ( |
|
|---|---|---|---|
| Sex (M/F) | 404/350 | 378/382 | 0.14 |
| Age (years) | 63.12 ± 8.05 | 63.10 ± 8.37 | 0.96 |
| Diabetes mellitus, n (%) | 110(7.3) | 0(0.0) | <0.001 |
| SBP(mmHg) | 158.21 ± 34.45 | 124.27 ± 12.48 | <0.001 |
| DBP(mmHg) | 92.60 ± 18.61 | 81.44 ± 38.87 | <0.001 |
| Hypertension, n (%) | 444(58.9) | 0(0.0) | <0.001 |
| Alcohol drinking, n(%) | 107 (14.2) | 55 (7.2) | <0.001 |
| Smoking, n(%) | 378 (50.1) | 88 (11.6) | <0.001 |
| LDL-C (mmol/L) | 2.78 ± 0.89 | 2.62 ± 0.71 | <0.001 |
| HDL-C (mmol/L) | 1.15 ± 0.33 | 1.31 ± 0.25 | <0.001 |
| TG (mmol/L) | 1.73 ± 1.12 | 1.25 ± 0.66 | <0.001 |
| TC (mmol/L) | 4.35 ± 1.06 | 4.11 ± 0.80 | <0.001 |
TG triglyceride, TC total cholesterol, LDL-C low-density lipoprotein cholesterol, HDL-C high-density lipoprotein cholesterol
*Analyzed by Student’s t test for continuous variable and by Pearson’s chi-square test for categorical variable
Information on the selected AdipoQ gene SNPs
| NCBI SNP ID | Gene position | Alleles (major/minor) | MAF (case/control) | %Geno |
|
|---|---|---|---|---|---|
| rs3774261 | Intron 2 | A/G | 0.49/ 0.41 | 98.88 | 0.20 |
| rs1063537 | 3’UTR | C/T | 0.26/ 0.28 | 99.01 | 0.42 |
| rs2082940 | 3’UTR | C/T | 0.26/ 0.30 | 98.88 | 0.60 |
UTR untranslated region, MAF minor allele frequency, HWE Hardy-Weinberg equilibrium. rs3774261 (+349 A > G), rs1063537 (+3228 C > T), rs2082940 (+3317 T > C)
%Geno is the percentage of non-missing genotypes for each marker
Lipid profiles in different carriers of ADIPOQ genotypes and alleles in controls
| Variable | No. | TG (mmol/L) | TC (mmol/L) | LDL-C (mmol/L) | HDL-C (mmol/L) |
|---|---|---|---|---|---|
| rs3774261 | n | ||||
| AA | 274 | 1.21 ± 0.67 | 4.11 ± 0.81 | 2.65 ± 0.71 | 1.30 ± 0.24 |
| AG | 350 | 1.27 ± 0.68 | 4.14 ± 0.81 | 2.63 ± 0.74 | 1.32 ± 0.25 |
| GG | 136 | 1.24 ± 0.59 | 4.04 ± 0.78 | 2.55 ± 0.66 | 1.31 ± 0.26 |
|
| 0.513 | 0.330 | 0.424 | 0.572 | |
| AA + AG | 486 | 1.27 ± 0.66 | 4.12 ± 0.80 | 2.61 ± 0.72 | 1.32 ± 0.26 |
|
| 0.292 | 0.669 | 0.517 | 0.323 | |
| rs1063537 | n | ||||
| TT | 56 | 1.34 ± 0.94 | 4.06 ± 0.65 | 2.55 ± 0.58 | 1.32 ± 0.27 |
| CT | 319 | 1.23 ± 0.65 | 4.13 ± 0.80 | 2.64 ± 0.72 | 1.31 ± 0.24 |
| CC | 385 | 1.25 ± 0.62 | 4.10 ± 0.83 | 2.62 ± 0.73 | 1.31 ± 0.26 |
|
| 0.521 | 0.767 | 0.684 | 0.966 | |
| TT + CT | 375 | 1.24 ± 0.70 | 4.12 ± 0.78 | 2.63 ± 0.70 | 1.31 ± 0.24 |
|
| 0.850 | 0.769 | 0.914 | 0.932 | |
| rs2082940 | n | ||||
| TT | 63 | 1.32 ± 0.91 | 4.05 ± 0.62 | 2.55 ± 0.57 | 1.32 ± 0.27 |
| CT | 323 | 1.20 ± 0.60 | 4.11 ± 0.80 | 2.63 ± 0.73 | 1.31 ± 0.24 |
| CC | 374 | 1.28 ± 0.67 | 4.12 ± 0.84 | 2.63 ± 0.73 | 1.32 ± 0.26 |
|
| 0.195 | 0.785 | 0.663 | 0.953 | |
| TT + CT | 386 | 1.22 ± 0.66 | 4.10 ± 0.77 | 2.62 ± 0.71 | 1.31 ± 0.25 |
|
| 0.235 | 0.717 | 0.831 | 0. 815 |
P a, comparisons among all gennotypes; P b, minor allele homozygote serves as the reference; P c, major allele homozygote serves as the reference. P values were calculated with ANCOVA adjusted for age, and sex
Genotypes distributions and allelic frequencies of the three SNPs among participants
| SNP | CHD (%) | Controls (%) | χ 2 |
|
|---|---|---|---|---|
| rs3774261 ( | ||||
| AA | 180 (0.24) | 274 (0.36) | 24.75 |
|
| AG | 387 (0.53) | 350 (0.46) | ||
| GG | 170 (0.23) | 136 (0.18) | ||
| G allele | 727 (0.49) | 622 (0.41) | 21.33 |
|
| rs1063537 ( | ||||
| TT | 51 (0.07) | 56 (0.07) | 2.60 | 0. 27 |
| CT | 283 (0.38) | 319 (0.42) | ||
| CC | 405 (0.55) | 385 (0.51) | ||
| T allele | 385 (0.26) | 431 (0.28) | 2.01 | 0.16 |
| rs2082940 ( | ||||
| TT | 51 (0.07) | 63 (0.088) | 4. 36 |
|
| CT | 283 (0.38) | 323 (0.42) | ||
| CC | 403 (0.55) | 374 (0.49) | ||
| T allele | 449 (0.3) | 385 (0.26) | 0.34 | 0.562 |
Data were analyzed by Pearson’s chi-square test. Bold values are statistically significant
Associations between AdipoQ gene polymorphisms and CHD risk
| SNPs | Models |
|
|
| AIC |
|---|---|---|---|---|---|
|
| Codominant |
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| Dominant |
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| Recessive |
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| Overdominant |
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| Log-additive |
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| Codominant | 0.84 | 0.68–1.04 | 0.112 | 2082.9 |
| 0.88 | 0.59–1.32 | 0.531 | |||
| Dominant | 0.85 | 0.69–1.04 | 0.11 | 2080.9 | |
| Recessive | 0.95 | 0.64–1.40 | 0.78 | 2083.4 | |
| Overdominant | 0.85 | 0.70–1.05 | 0.14 | 2081.3 | |
| Log-additive | 0.89 | 0.76–1.05 | 0.16 | 2081.5 | |
|
| Codominant | 0.81 | 0.66–1.00 | 0.056 | 2078.1 |
| 0.76 | 0.51–1.13 | 0.179 | |||
| Dominant |
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| |
| Recessive | 0.83 | 0.57–1.23 | 0.360 | 2079.8 | |
| Overdominant | 0.84 | 0.68–1.03 | 0.1 | 2077.9 | |
| Log-additive |
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OR odds ratio, CI confidence interval, AIC akaike information criterion. Codominant model (homozygote for the major allele serves as the reference); Dominant model (minor allele homozygote + heterozygote vs. major allele homozygote); Recessive model (minor allele homozygote vs. major allele homozygote + heterozygote); Overdominant model (heterozygote GA vs homozygote AA + GG serve as reference); Log-additive model (compares the relative significance of the minor allele : 0,1,2 in AA, AG, and GG respectively for the G allele of rs3774261; and 0,1,2 in CC, CT, and TT respectively for the T allele of rs1063537 and rs2082940). Bold values are statistically significant.
Unconditional logistic regression was used for data analyses. Age and sex, were adjusted during analyses. Bonferroni correction value =0.008 (0.05/6 = 0.008)
Pairwise linkage disequilibrium (D’) and correlation coefficient (r ) between the three SNPs in the ADIPOQ gene
| SNP |
|
|
|
|---|---|---|---|
| rs3774261 - rs1063537 | 0.9994 | - 0.5534 | 0.3063 |
| rs3774261 - rs2082940 | 0.9994 | - 0.5624 | 0.3163 |
| rs1063537 - rs2082940 | 0.9799 | 0.9644 | 0.9301 |
Haplotypes of AdipoQ Gene with the risk of CHD
| Haplotypes | Frequencies | OR (95%CI) |
| |||||
|---|---|---|---|---|---|---|---|---|
| No. | rs3774261 | rs1063537 | rs2082940 | Total | CHD | Controls | ||
| 1 | G | C | C | 0.4508 | 0.4937 | 0.4092 | 1.00 | |
| 2 | A | T | T | 0.2681 | 0.2605 | 0.2755 |
|
|
| 3 | A | C | C | 0.2669 | 0.2458 | 0.2873 |
|
|
| 4 | A | C | T | 0.0101 | 0 | 0.0199 | ||
| Rare | 0.0041 | 0 | 0.0018 | |||||
The analysis was adjusted by age and sex. Bold values are statistically significant. The reference group was the most common haplotype (GCC). Rare: haplotypes with frequencies below 0.01
ORs to develop CHD with different genotypes of three polymorphisms and plasma triglycerides (TG) levels*
| Lipid levels (mmol/L) | rs3774261 | rs1063537 | rs2082940 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| AA | AG | GG | CC | CT | TT | CC | CT | TT | |
| TG < 1.70 | 1.00a | 2.15 (1.64-2.83) | 1.87 (1.34-2.62) | 1.00a | 0.91 (0.71-1.16) | 0.75 (0.47-1.18) | 1.00a | 0.85 (0.66-1.08) | 0.65 (0.41-1.02) |
| 1.70 ≤ TG < 2.26 | 9.45 (4.04-22.08) | 3.74 (2.30-6.08) | 19.68 (5.86-66.03) | 3.80 (2.21-6.51) | 2.42 (1.43-4.09) | --- | 3.24 (1.92-5.48) | 2.56 (1.49-4.39) | --- |
| TG ≥ 2.26 | 4.55 (2.32-8.89) | 2.59 (1.62-4.13) | 14.87 (5.10-43.37) | 2.91 (1.79-4.72) | 1.44 (0.87-2.38) | 4.86 (1.02-23.12) | 2.70 (1.67-4.35) | 1.48 (0.89-2.48) | 3.10 (0.81-11.79) |
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*Interactions with other lipid profiles, diabetes, hypertension, smoking and alcohol drinking were not statistically significant (data not shown)
aThis group was the reference group
**Interaction between each polymorphism and plasma TG levels; unconditional logistic regression adjusted for age and sex was used in calculating OR, 95 %CI, and P-values of interactions. Bold values are statistically significant