| Literature DB >> 26201603 |
Jan Bressler1, Nora Franceschini2, Ellen W Demerath3, Thomas H Mosley4, Aaron R Folsom5, Eric Boerwinkle6,7.
Abstract
BACKGROUND: Telomerase reverse transcriptase (TERT) maintains telomere ends during DNA replication by catalyzing the addition of short telomere repeats. The expression of telomerase is normally repressed in somatic cells leading to a gradual shortening of telomeres and cellular senescence with aging. Interindividual variation in leukocyte telomere length has been previously associated with susceptibility to cardiovascular disease. The aim of the present study was to determine whether six variants in the TERT gene are associated with risk of incident coronary heart disease, incident ischemic stroke, and mortality in participants in the biracial population-based Atherosclerosis Risk in Communities (ARIC) study, including rs2736100 that was found to influence mean telomere length in a genome-wide analysis.Entities:
Mesh:
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Year: 2015 PMID: 26201603 PMCID: PMC4557920 DOI: 10.1186/s12881-015-0194-x
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
TERT genotype and allele frequencies stratified by race. ARIC study (1987–1989)
| African-American | MAF | White | MAF | p | |||
|---|---|---|---|---|---|---|---|
| dbSNP ID | N % | N % | |||||
| rs2736122 | |||||||
| GG | 1,857 | 56.1 | 0.25 | 5,283 | 53.8 | 0.27 | 0.04 |
| AG | 1,246 | 37.7 | 3,835 | 39.1 | |||
| AA | 205 | 6.2 | 698 | 7.1 | |||
| rs4246742 | |||||||
| TT | 1,444 | 43.5 | 0.35 | 7,037 | 71.6 | 0.15 | <0.01 |
| AT | 1,453 | 43.8 | 2,549 | 25.9 | |||
| AA | 421 | 12.7 | 241 | 2.5 | |||
| rs6863494 | |||||||
| TT | 2,950 | 90.3 | 0.05 | 9,823 | 100..0 | 0.00 | <0.01 |
| CT | 305 | 9.3 | 2 | 0.0 | |||
| CC | 13 | 0.4 | 0 | 0.0 | |||
| rs4975605 | |||||||
| CC | 1,012 | 30.6 | 0.45 | 2,742 | 27.9 | 0.47 | <0.01 |
| AC | 1,619 | 48.9 | 4,861 | 49.5 | |||
| AA | 679 | 20.5 | 2,218 | 22.6 | |||
| rs2736100* | |||||||
| CC | 683 | 20.6 | 0.54 | 2,533 | 25.8 | 0.49 | <0.01 |
| CA | 1,661 | 50.0 | 4,932 | 50.2 | |||
| AA | 975 | 29.4 | 2,361 | 24.0 | |||
| rs2853668 | |||||||
| GG | 841 | 25.3 | 0.50 | 5,432 | 55.3 | 0.26 | <0.01 |
| TG | 1,647 | 49.6 | 3,707 | 37.7 | |||
| TT | 831 | 25.1 | 688 | 7.0 | |||
dbSNP, The National Center for Biotechnology Information’s SNP database; SNP, single nucleotide polymorphism; ID, identification; N, number; MAF, minor allele frequency; p, p-value for difference in genotype frequencies between racial groups evaluated by Pearson’s chi-squared test; *A allele previously associated with shorter telomere length [21]
Linkage disequilibrium between TERT single nucleotide polymorphisms
| LD |
| ||||||
|---|---|---|---|---|---|---|---|
| r2, White | rs2736122 | rs4246742 | rs6863494* | rs4975605 | rs2736100 | rs2853668 | |
| rs2736122 | x | 0.053 | --- | 0.062 | 0.058 | 0.021 | |
| rs4246742 | 0.053 | x | --- | 0.09 | 0.005 | 0.006 | |
| rs6863494 | x | ||||||
| rs4975605 | 0.062 | 0.09 | --- | x | 0.04 | 0.034 | |
| rs2736100 | 0.058 | 0.005 | --- | 0.04 | x | 0.13 | |
| rs2853668 | 0.021 | 0.006 | --- | 0.034 | 0.13 | x | |
| r2, African-American | rs2736122 | rs4246742 | rs6863494 | rs4975605 | rs2736100 | rs2853668 | |
| rs2736122 | x | 0.001 | 0.011 | 0.052 | 0.001 | 0.016 | |
| rs4246742 | 0.001 | x | 0.097 | 0.047 | 0.015 | 0.001 | |
| rs6863494 | 0.011 | 0.097 | x | 0.032 | 0.024 | 0.004 | |
| rs4975605 | 0.052 | 0.047 | 0.032 | x | 0.021 | 0.011 | |
| rs2736100 | 0.001 | 0.015 | 0.024 | 0.021 | x | 0.023 | |
| rs2853668 | 0.016 | 0.001 | 0.004 | 0.011 | 0.023 | x |
LD, linkage disequilibrium; SNP, single nucleotide polymorphism; *rs6863494 is monomorphic in whites
Race-specific clinical and demographic characteristics. ARIC participants free of CVD (1987 – 1989)
| N | AA | N | White | p | |
|---|---|---|---|---|---|
| (N = 3,022) | (N = 8,987) | ||||
| N (%) | N (%) | ||||
| Male | 3,022 | 1,081 (35.8) | 8,987 | 4,030 (44.8) | <0.001 |
| Current smokers | 3,020 | 857 (28.4) | 8,984 | 2,145 (23.9) | <0.001 |
| Current alcohol | 2,994 | 951 (31.8) | 8,975 | 5,909 (65.8) | <0.001 |
| Hypertension | 3,009 | 1,613 (53.6) | 8,953 | 2,250 (25.1) | <0.001 |
| Diabetes | 2,953 | 532 (18.0) | 8,972 | 715 (8.0) | <0.001 |
| Incident MI/Fatal CHD | 3,022 | 403 (13.3) | 8,987 | 933 (10.4) | <0.001 |
| Incident ischemic stroke | 3,022 | 287 (9.5) | 8,987 | 452 (5.0) | <0.001 |
| Mean (SD) | Mean (SD) | ||||
| Age (years) | 3,022 | 53.1 (5.7) | 8,987 | 54.1 (5.7) | <0.001 |
| DBP, mm Hg | 3,022 | 79.6 (11.8) | 8,983 | 71.6 (10.0) | <0.001 |
| SBP, mm Hg | 3,022 | 127.8 (20.3) | 8,984 | 118.2 (16.9) | <0.001 |
| Glucose (mmol/L) | 2,941 | 6.4 (3.0) | 8,980 | 5.8 (1.6) | <0.001 |
| Insulin (pmol/L) | 2,941 | 138.0 (291.4) | 8,979 | 81.4 (94.9) | <0.001 |
| BMI (kg/m2) | 3,019 | 29.7 (6.1) | 8,980 | 26.9 (4.8) | <0.001 |
| Total cholesterol, mmol/L | 2,895 | 5.6 (1.2) | 8,971 | 5.5 (1.0) | 0.503 |
| LDL cholesterol, mmol/L | 2,870 | 3.6 (1.1) | 8,832 | 3.5 (1.0) | 0.281 |
| HDL cholesterol, mmol/L | 2,895 | 1.4 (0.4) | 8,973 | 1.3 (0.4) | <0.001 |
| Triglycerides, mmol/L | 2,896 | 1.3 (0.9) | 8,973 | 1.5 (1.0) | <0.001 |
CVD, cardiovascular disease; N, number; AA, African-American; p, p-value for tests of differences of group means determined by t-tests or of categorical values evaluated by Pearson’s chi-squared test between racial groups; MI, myocardial infarction; CHD, coronary heart disease; DBP, diastolic blood pressure; SBP, systolic blood pressure; BMI, body mass index; LDL, low density lipoprotein; HDL, high density lipoprotein
TERT sequence variation and incident coronary heart disease. ARIC study (1987 – 2011)
| African-American (N = 3,022) (MI/Fatal CHD = 403) | White (N = 8,987) (MI/Fatal CHD =933) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Model 1 | Model 2 | Model 1 | Model 2 | |||||||||
| dbSNP ID | HRR | 95 % CI | p | HRR | 95 % CI | p | HRR | 95 % CI | p | HRR | 95 % CI | p |
| rs2736122* | ||||||||||||
| CHD | 1.20 | 1.03, 1.40 | 0.02 | 1.18 | 1.01, 1.39 | 0.04 | 0.95 | 0.86, 1.06 | 0.38 | 0.94 | 0.85, 1.05 | 0.29 |
| rs4246742* | ||||||||||||
| CHD | 1.00 | 0.87, 1.15 | 0.97 | 0.98 | 0.85, 1.14 | 0.83 | 0.96 | 0.85, 1.09 | 0.56 | 0.99 | 0.87, 1.13 | 0.88 |
| rs6863494 | ||||||||||||
| CHD | 0.93 | 0.67,1.29 | 0.66 | 0.95 | 0.68, 1.32 | 0.77 | -- | -- | ||||
| rs4975605 | ||||||||||||
| CHD | 1.04 | 0.91, 1.19 | 0.55 | 1.05 | 0.91, 1.20 | 0.52 | 1.02 | 0.94, 1.12 | 0.61 | 1.02 | 0.93, 1.11 | 0.74 |
| rs2736100 | ||||||||||||
| CHD | 0.99 | 0.86, 1.14 | 0.89 | 1.00 | 0.86, 1.15 | 0.97 | 0.97 | 0.88, 1.06 | 0.48 | 0.98 | 0.89, 1.07 | 0.60 |
| rs2853668 | ||||||||||||
| CHD | 0.93 | 0.81, 1.07 | 0.32 | 0.98 | 0.84, 1.13 | 0.73 | 1.05 | 0.95, 1.16 | 0.35 | 1.07 | 0.97, 1.19 | 0.19 |
dbSNP, The National Center for Biotechnology Information’s SNP database; SNP, single nucleotide polymorphism; ID, identification; N, number; HRR, hazard rate ratio; CI, confidence interval; p, p-value for hazard rate ratios from Cox regression models; MI, myocardial infarction; CHD, coronary heart disease; Model 1, adjusted for age and gender; Model 2, adjusted for age, gender, BMI, current smoking, diabetes, hypertension, HDL cholesterol, and LDL cholesterol; *not consistent with proportional hazards assumptions in whites for rs2736122 (Model 1) and rs4246742 (Models 1 and 2)
TERT sequence variation and incident ischemic stroke. ARIC study (1987 – 2011)
| African-American (N = 3,022) (Ischemic Stroke = 287) | White (N = 8,987 ) (Ischemic Stroke = 452) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Model 1 | Model 2 | Model 1 | Model 2 | |||||||||
| dbSNP ID | HRR | 95 % CI | p | HRR | 95 % CI | p | HRR | 95 % CI | p | HRR | 95 % CI | p |
| rs2736122 | ||||||||||||
| Isch. stroke | 0.89 | 0.73, 1.08 | 0.24 | 0.90 | 0.74, 1.10 | 0.32 | 1.01 | 0.87, 1.17 | 0.89 | 1.02 | 0.87, 1.18 | 0.82 |
| rs4246742 | ||||||||||||
| Isch. stroke | 0.94 | 0.79, 1.11 | 0.47 | 0.96 | 0.80, 1.15 | 0.67 | 0.99 | 0.82, 1.18 | 0.89 | 1.00 | 0.83, 1.21 | 0.99 |
| rs6863494 | ||||||||||||
| Isch. stroke | 0.90 | 0.61, 1.33 | 0.59 | 0.96 | 0.65, 1.42 | 0.84 | -- | -- | ||||
| rs4975605 | ||||||||||||
| Isch. stroke | 0.94 | 0.80, 1.11 | 0.48 | 0.88 | 0.74, 1.04 | 0.14 | 1.00 | 0.88, 1.14 | 0.97 | 1.00 | 0.87, 1.14 | 0.98 |
| rs2736100 | ||||||||||||
| Isch. stroke | 1.07 | 0.91, 1.27 | 0.41 | 1.03 | 0.86, 1.22 | 0.75 | 0.93 | 0.82, 1.06 | 0.31 | 0.93 | 0.81, 1.06 | 0.27 |
| rs2853668 | ||||||||||||
| Isch. stroke | 1.17 | 1.00, 1.38 | 0.05 | 1.08 | 0.91, 1.28 | 0.36 | 1.02 | 0.88, 1.18 | 0.76 | 1.03 | 0.89, 1.20 | 0.71 |
dbSNP, The National Center for Biotechnology Information’s SNP database; SNP, single nucleotide polymorphism; ID, identification; N, number; HRR, hazard rate ratio; CI, confidence interval; p, p-value for hazard rate ratios from Cox regression models; Model 1, adjusted for age and gender; Model 2, adjusted for age, gender, BMI, current smoking, diabetes, hypertension, HDL cholesterol, LDL cholesterol; Isch., ischemic
TERT sequence variation and all-cause mortality. ARIC study (1987 – 2011)
| African-American (N = 3,319) (Deaths = 1,203) | White (N = 9,827) (Deaths = 2,875) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Model 1 | Model 2 | Model 1 | Model 2 | |||||||||
| dbSNP ID | HRR | 95 % CI | p | HRR | 95 % CI | p | HRR | 95 % CI | p | HRR | 95 % CI | p |
| rs2736122 | ||||||||||||
| Mortality | 1.05 | 0.95, 1.15 | 0.36 | 1.04 | 0.94, 1.14 | 0.47 | 1.04 | 0.98, 1.10 | 0.22 | 1.03 | 0.97, 1.10 | 0.27 |
| rs4246742 | ||||||||||||
| Mortality | 0.99 | 0.91, 1.08 | 0.85 | 0.99 | 0.90, 1.08 | 0.76 | 1.01 | 0.94, 1.08 | 0.80 | 1.02 | 0.95, 1.09 | 0.63 |
| rs6863494 | ||||||||||||
| Mortality | 1.00 | 0.84, 1.20 | 0.96 | 1.00 | 0.84, 1.20 | 0.96 | -- | -- | ||||
| rs4975605 | ||||||||||||
| Mortality | 0.96 | 0.89, 1.04 | 0.37 | 0.94 | 0.87, 1.02 | 0.16 | 1.00 | 0.95, 1.05 | 0.96 | 0.99 | 0.94, 1.04 | 0.74 |
| rs2736100 | ||||||||||||
| Mortality | 1.00 | 0.92, 1.09 | 0.93 | 0.98 | 0.90, 1.07 | 0.73 | 1.03 | 0.98, 1.09 | 0.21 | 1.03 | 0.97, 1.08 | 0.32 |
| rs2853668* | ||||||||||||
| Mortality | 1.00 | 0.92, 1.09 | 0.94 | 0.97 | 0.89, 1.05 | 0.44 | 0.99 | 0.93, 1.05 | 0.73 | 1.02 | 0.96, 1.08 | 0.62 |
dbSNP, The National Center for Biotechnology Information’s SNP database; SNP, single nucleotide polymorphism; ID, identification; N, number; HRR, hazard rate ratio; CI, confidence interval; p, p-value for hazard rate ratios from Cox regression models; Model 1, adjusted for age and gender; Model 2, adjusted for age, gender, BMI, current smoking, diabetes, hypertension, HDL cholesterol, LDL cholesterol; * not consistent with proportional hazards assumptions in whites for rs2853668 (Model 1)