Literature DB >> 28844219

Static solid-state 2H NMR methods in studies of protein side-chain dynamics.

Liliya Vugmeyster1, Dmitry Ostrovsky2.   

Abstract

In this review, we discuss the experimental static deuteron NMR techniques and computational approaches most useful for the investigation of side-chain dynamics in protein systems. Focus is placed on the interpretation of line shape and relaxation data within the framework of motional modeling. We consider both jump and diffusion models and apply them to uncover glassy behaviors, conformational exchange and dynamical transitions in proteins. Applications are chosen from globular and membrane proteins, amyloid fibrils, peptide adsorbed on surfaces and proteins specific to connective tissues.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Dynamical transitions; Protein dynamics; Solid-state NMR; Static deuteron NMR

Mesh:

Substances:

Year:  2017        PMID: 28844219      PMCID: PMC5576518          DOI: 10.1016/j.pnmrs.2017.02.001

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN: 0079-6565            Impact factor:   9.795


  46 in total

1.  The dynamical transition of proteins, concepts and misconceptions.

Authors:  Wolfgang Doster
Journal:  Eur Biophys J       Date:  2008-02-13       Impact factor: 1.733

2.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

3.  NMR studies of localized water and protein backbone dynamics in mechanically strained elastin.

Authors:  Cheng Sun; Odingo Mitchell; Jiaxin Huang; Gregory S Boutis
Journal:  J Phys Chem B       Date:  2011-11-07       Impact factor: 2.991

4.  Solid-state nuclear magnetic resonance spectroscopy studies of furanose ring dynamics in the DNA HhaI binding site.

Authors:  Gary A Meints; Paul A Miller; Kari Pederson; Zahra Shajani; Gary Drobny
Journal:  J Am Chem Soc       Date:  2008-05-20       Impact factor: 15.419

5.  Freezing of dynamics of a methyl group in a protein hydrophobic core at cryogenic temperatures by deuteron NMR spectroscopy.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Joseph J Ford; Andrew S Lipton
Journal:  J Am Chem Soc       Date:  2010-03-31       Impact factor: 15.419

6.  Protein dynamics in the solid state from 2H NMR line shape analysis: a consistent perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2015-02-03       Impact factor: 2.991

7.  Self-propagating, molecular-level polymorphism in Alzheimer's beta-amyloid fibrils.

Authors:  Aneta T Petkova; Richard D Leapman; Zhihong Guo; Wai-Ming Yau; Mark P Mattson; Robert Tycko
Journal:  Science       Date:  2005-01-14       Impact factor: 47.728

8.  Methyl group rotation, 1H spin-lattice relaxation in an organic solid, and the analysis of nonexponential relaxation.

Authors:  Peter A Beckmann; Evan Schneider
Journal:  J Chem Phys       Date:  2012-02-07       Impact factor: 3.488

9.  Dynamics of Hydrophobic Core Phenylalanine Residues Probed by Solid-State Deuteron NMR.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Toni Villafranca; Janelle Sharp; Wei Xu; Andrew S Lipton; Gina L Hoatson; Robert L Vold
Journal:  J Phys Chem B       Date:  2015-11-12       Impact factor: 2.991

10.  Glassy dynamics of protein methyl groups revealed by deuteron NMR.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Kirsten Penland; Gina L Hoatson; Robert L Vold
Journal:  J Phys Chem B       Date:  2013-01-22       Impact factor: 2.991

View more
  14 in total

Review 1.  Basic experiments in 2H static NMR for the characterization of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Methods       Date:  2018-04-27       Impact factor: 3.608

2.  MOMD Analysis of NMR Line Shapes from Aβ-Amyloid Fibrils: A New Tool for Characterizing Molecular Environments in Protein Aggregates.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-05-02       Impact factor: 2.991

3.  Solid-state NMR reveals a comprehensive view of the dynamics of the flexible, disordered N-terminal domain of amyloid-β fibrils.

Authors:  Dan Fai Au; Dmitry Ostrovsky; Riqiang Fu; Liliya Vugmeyster
Journal:  J Biol Chem       Date:  2019-02-08       Impact factor: 5.157

4.  Protein dynamics in the solid-state from 2H NMR lineshape analysis. III. MOMD in the presence of Magic Angle Spinning.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  Solid State Nucl Magn Reson       Date:  2017-11-21       Impact factor: 2.293

5.  How can biological modeling help cell biology?

Authors:  Elizabeth Sztul
Journal:  Cell Logist       Date:  2017-11-14

6.  Deuteron rotating frame relaxation for the detection of slow motions in rotating solids.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Alexander Greenwood; Riqiang Fu
Journal:  J Magn Reson       Date:  2022-02-19       Impact factor: 2.229

7.  Phenyl-Ring Dynamics in Amyloid Fibrils and Proteins: The Microscopic-Order-Macroscopic-Disorder Perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-09-10       Impact factor: 2.991

8.  Dynamics of Serine-8 Side-Chain in Amyloid-β Fibrils and Fluorenylmethyloxycarbonyl Serine Amino Acid, Investigated by Solid-State Deuteron NMR.

Authors:  Liliya Vugmeyster; Dan Fai Au; Dmitry Ostrovsky; Dillon Ray Lee Rickertsen; Scott M Reed
Journal:  J Phys Chem B       Date:  2020-05-27       Impact factor: 2.991

Review 9.  Advances in studying protein disorder with solid-state NMR.

Authors:  Ansgar B Siemer
Journal:  Solid State Nucl Magn Reson       Date:  2020-01-12       Impact factor: 2.293

Review 10.  Recent developments in deuterium solid-state NMR for the detection of slow motions in proteins.

Authors:  Liliya Vugmeyster
Journal:  Solid State Nucl Magn Reson       Date:  2021-01-07       Impact factor: 2.293

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.