Literature DB >> 29208317

Protein dynamics in the solid-state from 2H NMR lineshape analysis. III. MOMD in the presence of Magic Angle Spinning.

Eva Meirovitch1, Zhichun Liang2, Jack H Freed2.   

Abstract

We report on a new approach to the analysis of dynamic NMR lineshapes from polycrystalline (i.e., macroscopically disordered) samples in the presence of Magic Angle Spinning (MAS). This is an application of the Stochastic Liouville Equation developed by Freed and co-workers for treating restricted (i.e., microscopically ordered) motions. The 2H nucleus in an internally-mobile C-CD3 moiety serves as a prototype probe. The acronym is 2H/MOMD/MAS, where MOMD stands for "microscopic-order-macroscopic-disorder." The key elements describing internal motions - their type, the local spatial restrictions, and related features of local geometry - are treated in MOMD generally, within their rigorous three-dimensional tensorial requirements. Based on this representation a single physically well-defined model of local motion has the capability of reproducing experimental spectra. There exist other methods for analyzing dynamic 2H/MAS spectra which advocate simple motional modes. Yet, to reproduce satisfactorily the experimental lineshapes, one has either to use unusual parameter values, or combine several simple motional modes. The multi-simple-mode reasoning assumes independence of the constituent modes, features ambiguity as different simple modes may be used, renders inter-system comparison difficult as the overall models differ, and makes possible model-improvement only by adding yet another simple mode, i.e., changing the overall model. 2H/MOMD/MAS is free of such limitations and inherently provides a clear physical interpretation. These features are illustrated. The advantage of 2H/MOMD/MAS in dealing with sensitive but hardly investigated slow-motional lineshapes is demonstrated by applying it to actual experimental data. The results differ from those obtained previously with a two-site exchange scheme that yielded unusual parameters.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Dynamics; MAS; MOMD; Slow-motional NMR lineshapes; Stochastic Liouville Equation

Mesh:

Substances:

Year:  2017        PMID: 29208317      PMCID: PMC5772661          DOI: 10.1016/j.ssnmr.2017.11.001

Source DB:  PubMed          Journal:  Solid State Nucl Magn Reson        ISSN: 0926-2040            Impact factor:   2.293


  26 in total

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3.  Protein dynamics in the solid state from 2H NMR line shape analysis: a consistent perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
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Review 4.  Advances in solid-state relaxation methodology for probing site-specific protein dynamics.

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5.  Deuterium magic angle spinning NMR used to study the dynamics of peptides adsorbed onto polystyrene and functionalized polystyrene surfaces.

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Review 6.  Recent advances in solid-state nuclear magnetic resonance techniques to quantify biomolecular dynamics.

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7.  NMR study of the adsorption-desorption kinetics of dissolved tetraalanine in MCM-41 mesoporous material.

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8.  Coherent and stochastic averaging in solid-state NMR.

Authors:  Alexander A Nevzorov
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9.  Slow conformational exchange and overall rocking motion in ubiquitin protein crystals.

Authors:  Vilius Kurauskas; Sergei A Izmailov; Olga N Rogacheva; Audrey Hessel; Isabel Ayala; Joyce Woodhouse; Anastasya Shilova; Yi Xue; Tairan Yuwen; Nicolas Coquelle; Jacques-Philippe Colletier; Nikolai R Skrynnikov; Paul Schanda
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Review 10.  Studying Dynamics by Magic-Angle Spinning Solid-State NMR Spectroscopy: Principles and Applications to Biomolecules.

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Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-15       Impact factor: 9.795

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  7 in total

1.  MOMD Analysis of NMR Line Shapes from Aβ-Amyloid Fibrils: A New Tool for Characterizing Molecular Environments in Protein Aggregates.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-05-02       Impact factor: 2.991

2.  Local ordering and dynamics in anisotropic media by magnetic resonance: from liquid crystals to proteins.

Authors:  Eva Meirovitch; Jack H Freed
Journal:  Liq Cryst       Date:  2019-07-01

3.  Structural Dynamics by NMR in the Solid State: The Unified MOMD Perspective Applied to Organic Frameworks with Interlocked Molecules.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2020-07-14       Impact factor: 2.991

4.  The N-Terminal Domain of Aβ40-Amyloid Fibril: The MOMD Perspective of its Dynamic Structure from NMR Lineshape Analysis.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2022-02-05       Impact factor: 2.991

5.  Phenyl-Ring Dynamics in Amyloid Fibrils and Proteins: The Microscopic-Order-Macroscopic-Disorder Perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-09-10       Impact factor: 2.991

6.  Structural Dynamics by NMR in the Solid State: II. The MOMD Perspective of the Dynamic Structure of Metal-Organic Frameworks Comprising Several Mobile Components.

Authors:  Eva Meirovitch; Zhichun Liang; Robert W Schurko; Stephen J Loeb; Jack H Freed
Journal:  J Phys Chem B       Date:  2022-03-25       Impact factor: 3.466

7.  Conformational Entropy from Restricted Bond-Vector Motion in Proteins: The Symmetry of the Local Restrictions and Relation to NMR Relaxation.

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Journal:  J Phys Chem B       Date:  2020-05-15       Impact factor: 2.991

  7 in total

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