Literature DB >> 18270694

The dynamical transition of proteins, concepts and misconceptions.

Wolfgang Doster1.   

Abstract

The dynamics of hydrated proteins and of protein crystals can be studied within a wide temperature range, since the water of hydration does not crystallize at low temperature. Instead it turns into an amorphous glassy state below 200 K. Extending the temperature range facilitates the spectral separation of different molecular processes. The conformational motions of proteins show an abrupt enhancement near 180 K, which has been called a "dynamical transition". In this contribution various aspects of the transition are critically reviewed: the role of the instrumental resolution function in extracting displacements from neutron elastic scattering data and the question of the appropriate dynamic model, discrete transitions between states of different energy versus continuous diffusion inside a harmonic well, are discussed. A decomposition of the transition involving two motional components is performed: rotational transitions of methyl groups and small scale librations of side-chains, induced by water at the protein surface. Both processes create an enhancement of the observed amplitude. The onset occurs, when their time scale becomes compatible with the resolution of the spectrometer. The reorientational rate of hydration water follows a super-Arrhenius temperature dependence, a characteristic feature of a dynamical transition. It occurs only with hydrated proteins, while the torsional motion of methyl groups takes place also in the dehydrated or solvent-vitrified system. Finally, the role of fast hydrogen bond fluctuations contributing to the amplitude enhancement is discussed.

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Year:  2008        PMID: 18270694     DOI: 10.1007/s00249-008-0274-3

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  36 in total

Review 1.  How soft is a protein? A protein dynamics force constant measured by neutron scattering.

Authors:  G Zaccai
Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

2.  Molecular dynamics decomposition of temperature-dependent elastic neutron scattering by a protein solution.

Authors:  Jennifer A Hayward; John L Finney; Roy M Daniel; Jeremy C Smith
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

3.  Mean-square displacement relationship in bioprotectant systems by elastic neutron scattering.

Authors:  S Magazù; G Maisano; F Migliardo; C Mondelli
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

4.  Protein dynamics in solution and powder measured by incoherent elastic neutron scattering: the influence of Q-range and energy resolution.

Authors:  Frank Gabel
Journal:  Eur Biophys J       Date:  2004-09-16       Impact factor: 1.733

5.  Dynamic instability of liquidlike motions in a globular protein observed by inelastic neutron scattering.

Authors: 
Journal:  Phys Rev Lett       Date:  1990-08-20       Impact factor: 9.161

6.  Enzyme activity and flexibility at very low hydration.

Authors:  V Kurkal; R M Daniel; John L Finney; M Tehei; R V Dunn; Jeremy C Smith
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

7.  Onsets of anharmonicity in protein dynamics.

Authors:  J H Roh; V N Novikov; R B Gregory; J E Curtis; Z Chowdhuri; A P Sokolov
Journal:  Phys Rev Lett       Date:  2005-07-12       Impact factor: 9.161

8.  Neutron scattering reveals the dynamic basis of protein adaptation to extreme temperature.

Authors:  Moeava Tehei; Dominique Madern; Bruno Franzetti; Giuseppe Zaccai
Journal:  J Biol Chem       Date:  2005-10-03       Impact factor: 5.157

9.  Enzyme activity below the dynamical transition at 220 K.

Authors:  R M Daniel; J C Smith; M Ferrand; S Héry; R Dunn; J L Finney
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

10.  Heme-solvent coupling: a Mössbauer study of myoglobin in sucrose.

Authors:  H Lichtenegger; W Doster; T Kleinert; A Birk; B Sepiol; G Vogl
Journal:  Biophys J       Date:  1999-01       Impact factor: 4.033

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  25 in total

1.  Dynamic properties of photosystem II membranes at physiological temperatures characterized by elastic incoherent neutron scattering. Increased flexibility associated with the inactivation of the oxygen evolving complex.

Authors:  Gergely Nagy; Jörg Pieper; Sashka B Krumova; László Kovács; Marcus Trapp; Győző Garab; Judith Peters
Journal:  Photosynth Res       Date:  2011-11-04       Impact factor: 3.573

2.  Macromolecular dynamics in red blood cells investigated using neutron spectroscopy.

Authors:  Andreas Maximilian Stadler; Lambert van Eijck; Franz Demmel; Gerhard Artmann
Journal:  J R Soc Interface       Date:  2010-08-25       Impact factor: 4.118

3.  Dynamics at the protein-water interface from 17O spin relaxation in deeply supercooled solutions.

Authors:  Carlos Mattea; Johan Qvist; Bertil Halle
Journal:  Biophys J       Date:  2008-06-27       Impact factor: 4.033

4.  Study of solvent-protein coupling effects by neutron scattering.

Authors:  B Varga; F Migliardo; E Takacs; B Vertessy; Salvatore Magazù; M T F Telling
Journal:  J Biol Phys       Date:  2009-10-01       Impact factor: 1.365

5.  Mean-squared atomic displacements in hydrated lysozyme, native and denatured.

Authors:  Eugene Mamontov; Hugh O'Neill; Qiu Zhang
Journal:  J Biol Phys       Date:  2010-01-13       Impact factor: 1.365

6.  Comparative Dynamics of Methionine Side-Chain in FMOC-Methionine and in Amyloid Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Chem Phys Lett       Date:  2017-02-14       Impact factor: 2.328

7.  Solid-state NMR reveals a comprehensive view of the dynamics of the flexible, disordered N-terminal domain of amyloid-β fibrils.

Authors:  Dan Fai Au; Dmitry Ostrovsky; Riqiang Fu; Liliya Vugmeyster
Journal:  J Biol Chem       Date:  2019-02-08       Impact factor: 5.157

8.  Fast Motions of Key Methyl Groups in Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Matthew A Clark; Isaac B Falconer; Gina L Hoatson; Wei Qiang
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

9.  Heterogeneity of protein substates visualized by spin-label EPR.

Authors:  Rita Guzzi; Rosa Bartucci; Derek Marsh
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

10.  Temperature-dependent macromolecular X-ray crystallography.

Authors:  Martin Weik; Jacques Philippe Colletier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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