Literature DB >> 33450712

Recent developments in deuterium solid-state NMR for the detection of slow motions in proteins.

Liliya Vugmeyster1.   

Abstract

Slow timescale dynamics in proteins are essential for a variety of biological functions spanning ligand binding, enzymatic catalysis, protein folding and misfolding regulations, as well as protein-protein and protein-nucleic acid interactions. In this review, we focus on the experimental and theoretical developments of 2H static NMR methods applicable for studies of microsecond to millisecond motional modes in proteins, particularly rotating frame relaxation dispersion (R1ρ), quadrupolar Carr-Purcell-Meiboom-Gill (QCPMG) relaxation dispersion, and quadrupolar chemical exchange saturation transfer NMR experiments (Q-CEST). With applications chosen from amyloid-β fibrils, we show the complementarity of these approaches for elucidating the complexities of conformational ensembles in disordered domains in the non-crystalline solid state, with the employment of selective deuterium labels. Combined with recent advances in relaxation dispersion backbone measurements for 15N/13C/1H nuclei, these techniques provide powerful tools for studies of biologically relevant timescale dynamics in disordered domains in the solid state.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Deuterium NMR; Protein dynamics; Relaxation dispersion; Solid-state NMR

Mesh:

Substances:

Year:  2021        PMID: 33450712      PMCID: PMC7903970          DOI: 10.1016/j.ssnmr.2020.101710

Source DB:  PubMed          Journal:  Solid State Nucl Magn Reson        ISSN: 0926-2040            Impact factor:   2.293


  56 in total

1.  A thermometer for nonspinning solid-state NMR spectroscopy

Authors: 
Journal:  J Magn Reson       Date:  2000-10       Impact factor: 2.229

2.  The N-terminal region of amyloid β controls the aggregation rate and fibril stability at low pH through a gain of function mechanism.

Authors:  Kristoffer Brännström; Anders Öhman; Lina Nilsson; Mathias Pihl; Linda Sandblad; Anders Olofsson
Journal:  J Am Chem Soc       Date:  2014-07-28       Impact factor: 15.419

3.  Microsecond Timescale Protein Dynamics: a Combined Solid-State NMR Approach.

Authors:  Petra Rovó; Rasmus Linser
Journal:  Chemphyschem       Date:  2017-12-14       Impact factor: 3.102

4.  Selective inversion investigations of slow molecular motion in solid state deuteron NMR spectroscopy.

Authors:  M J Brown; R L Vold; G L Hoatson
Journal:  Solid State Nucl Magn Reson       Date:  1996-04       Impact factor: 2.293

5.  Slow motions in the hydrophobic core of chicken villin headpiece subdomain and their contributions to configurational entropy and heat capacity from solid-state deuteron NMR measurements.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Anastasia Khadjinova; Jeremy Ellden; Gina L Hoatson; Robert L Vold
Journal:  Biochemistry       Date:  2011-11-18       Impact factor: 3.162

6.  Experimental constraints on quaternary structure in Alzheimer's beta-amyloid fibrils.

Authors:  Aneta T Petkova; Wai-Ming Yau; Robert Tycko
Journal:  Biochemistry       Date:  2006-01-17       Impact factor: 3.162

Review 7.  Concepts and Methods of Solid-State NMR Spectroscopy Applied to Biomembranes.

Authors:  Trivikram R Molugu; Soohyun Lee; Michael F Brown
Journal:  Chem Rev       Date:  2017-09-14       Impact factor: 60.622

8.  Deuterium solid-state NMR quadrupolar order rotating frame relaxation with applications to amyloid-β fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Magn Reson Chem       Date:  2020-11-10       Impact factor: 2.392

9.  Slow conformational exchange and overall rocking motion in ubiquitin protein crystals.

Authors:  Vilius Kurauskas; Sergei A Izmailov; Olga N Rogacheva; Audrey Hessel; Isabel Ayala; Joyce Woodhouse; Anastasya Shilova; Yi Xue; Tairan Yuwen; Nicolas Coquelle; Jacques-Philippe Colletier; Nikolai R Skrynnikov; Paul Schanda
Journal:  Nat Commun       Date:  2017-07-27       Impact factor: 14.919

10.  Site-resolved measurement of microsecond-to-millisecond conformational-exchange processes in proteins by solid-state NMR spectroscopy.

Authors:  Martin Tollinger; Astrid C Sivertsen; Beat H Meier; Matthias Ernst; Paul Schanda
Journal:  J Am Chem Soc       Date:  2012-08-28       Impact factor: 15.419

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  3 in total

1.  The N-Terminal Domain of Aβ40-Amyloid Fibril: The MOMD Perspective of its Dynamic Structure from NMR Lineshape Analysis.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2022-02-05       Impact factor: 2.991

2.  Deuteron rotating frame relaxation for the detection of slow motions in rotating solids.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Alexander Greenwood; Riqiang Fu
Journal:  J Magn Reson       Date:  2022-02-19       Impact factor: 2.229

3.  Comparative Hydrophobic Core Dynamics Between Wild-Type Amyloid-β Fibrils, Glutamate-3 Truncation, and Serine-8 Phosphorylation.

Authors:  Liliya Vugmeyster; Dan Fai Au; Matthew C Smith; Dmitry Ostrovsky
Journal:  Chemphyschem       Date:  2021-12-13       Impact factor: 3.520

  3 in total

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