Literature DB >> 31222776

Post-Transcriptional Noise Control.

Maike M K Hansen1, Leor S Weinberger1,2,3.   

Abstract

Recent evidence indicates that transcriptional bursts are intrinsically amplified by messenger RNA cytoplasmic processing to generate large stochastic fluctuations in protein levels. These fluctuations can be exploited by cells to enable probabilistic bet-hedging decisions. But large fluctuations in gene expression can also destabilize cell-fate commitment. Thus, it is unclear if cells temporally switch from high to low noise, and what mechanisms enable this switch. Here, the discovery of a post-transcriptional mechanism that attenuates noise in HIV is reviewed. Early in its life cycle, HIV amplifies transcriptional fluctuations to probabilistically select alternate fates, whereas at late times, HIV utilizes a post-transcriptional feedback mechanism to commit to a specific fate. Reanalyzing various reported post-transcriptional negative feedback architectures reveals that they attenuate noise more efficiently than classic transcriptional autorepression, leading to the derivation of an assay to detect post-transcriptional motifs. It is hypothesized that coupling transcriptional and post-transcriptional autoregulation enables efficient temporal noise control to benefit developmental bet-hedging decisions.
© 2019 WILEY Periodicals, Inc.

Entities:  

Keywords:  autoregulation; fate selection; negative feedback; noise control; post-transcriptional; splicing; stochastic noise

Mesh:

Substances:

Year:  2019        PMID: 31222776      PMCID: PMC6637019          DOI: 10.1002/bies.201900044

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  98 in total

1.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Efficient attenuation of stochasticity in gene expression through post-transcriptional control.

Authors:  Peter S Swain
Journal:  J Mol Biol       Date:  2004-12-03       Impact factor: 5.469

3.  Real-time kinetics of gene activity in individual bacteria.

Authors:  Ido Golding; Johan Paulsson; Scott M Zawilski; Edward C Cox
Journal:  Cell       Date:  2005-12-16       Impact factor: 41.582

Review 4.  The functional consequences of intron retention: alternative splicing coupled to NMD as a regulator of gene expression.

Authors:  Ying Ge; Bo T Porse
Journal:  Bioessays       Date:  2013-12-18       Impact factor: 4.345

5.  Transcript degradation and noise of small RNA-controlled genes in a switch activated network in Escherichia coli.

Authors:  Rinat Arbel-Goren; Asaf Tal; Bibudha Parasar; Alvah Dym; Nina Costantino; Javier Muñoz-García; Donald L Court; Joel Stavans
Journal:  Nucleic Acids Res       Date:  2016-04-16       Impact factor: 16.971

6.  Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.

Authors:  John R S Newman; Sina Ghaemmaghami; Jan Ihmels; David K Breslow; Matthew Noble; Joseph L DeRisi; Jonathan S Weissman
Journal:  Nature       Date:  2006-05-14       Impact factor: 49.962

7.  Gene network shaping of inherent noise spectra.

Authors:  D W Austin; M S Allen; J M McCollum; R D Dar; J R Wilgus; G S Sayler; N F Samatova; C D Cox; M L Simpson
Journal:  Nature       Date:  2006-02-02       Impact factor: 49.962

8.  Regulatory logic driving stable levels of defective proventriculus expression during terminal photoreceptor specification in flies.

Authors:  Jenny Yan; Caitlin Anderson; Kayla Viets; Sang Tran; Gregory Goldberg; Stephen Small; Robert J Johnston
Journal:  Development       Date:  2017-01-26       Impact factor: 6.868

Review 9.  Functional roles for noise in genetic circuits.

Authors:  Avigdor Eldar; Michael B Elowitz
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

10.  HIV Latency Is Established Directly and Early in Both Resting and Activated Primary CD4 T Cells.

Authors:  Leonard Chavez; Vincenzo Calvanese; Eric Verdin
Journal:  PLoS Pathog       Date:  2015-06-11       Impact factor: 6.823

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  2 in total

1.  RNase E and HupB dynamics foster mycobacterial cell homeostasis and fitness.

Authors:  Anna Griego; Thibaut Douché; Quentin Giai Gianetto; Mariette Matondo; Giulia Manina
Journal:  iScience       Date:  2022-04-12

2.  Gene expression noise in a complex artificial toxin expression system.

Authors:  Alexandra Goetz; Andreas Mader; Benedikt von Bronk; Anna S Weiss; Madeleine Opitz
Journal:  PLoS One       Date:  2020-01-21       Impact factor: 3.240

  2 in total

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