Literature DB >> 12432407

Engineered gene circuits.

Jeff Hasty1, David McMillen, J J Collins.   

Abstract

A central focus of postgenomic research will be to understand how cellular phenomena arise from the connectivity of genes and proteins. This connectivity generates molecular network diagrams that resemble complex electrical circuits, and a systematic understanding will require the development of a mathematical framework for describing the circuitry. From an engineering perspective, the natural path towards such a framework is the construction and analysis of the underlying submodules that constitute the network. Recent experimental advances in both sequencing and genetic engineering have made this approach feasible through the design and implementation of synthetic gene networks amenable to mathematical modelling and quantitative analysis. These developments have signalled the emergence of a gene circuit discipline, which provides a framework for predicting and evaluating the dynamics of cellular processes. Synthetic gene networks will also lead to new logical forms of cellular control, which could have important applications in functional genomics, nanotechnology, and gene and cell therapy.

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Year:  2002        PMID: 12432407     DOI: 10.1038/nature01257

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  193 in total

1.  Frequency domain analysis of noise in autoregulated gene circuits.

Authors:  Michael L Simpson; Chris D Cox; Gary S Sayler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-01       Impact factor: 11.205

2.  On schemes of combinatorial transcription logic.

Authors:  Nicolas E Buchler; Ulrich Gerland; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-17       Impact factor: 11.205

3.  Design then mutate.

Authors:  Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-16       Impact factor: 11.205

4.  Computational design of a Zn2+ receptor that controls bacterial gene expression.

Authors:  M A Dwyer; L L Looger; H W Hellinga
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-19       Impact factor: 11.205

5.  The selective values of alleles in a molecular network model are context dependent.

Authors:  Jean Peccoud; Kent Vander Velden; Dean Podlich; Chris Winkler; Lane Arthur; Mark Cooper
Journal:  Genetics       Date:  2004-04       Impact factor: 4.562

6.  Programmable cells: interfacing natural and engineered gene networks.

Authors:  Hideki Kobayashi; Mads Kaern; Michihiro Araki; Kristy Chung; Timothy S Gardner; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

7.  Tracking operator state fluctuations in gene expression in single cells.

Authors:  B Banerjee; S Balasubramanian; G Ananthakrishna; T V Ramakrishnan; G V Shivashankar
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

8.  Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing.

Authors:  Jordi Garcia-Ojalvo; Michael B Elowitz; Steven H Strogatz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-15       Impact factor: 11.205

9.  Boolean logic functions of a synthetic peptide network.

Authors:  Gonen Ashkenasy; M Reza Ghadiri
Journal:  J Am Chem Soc       Date:  2004-09-15       Impact factor: 15.419

10.  A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles.

Authors:  Carlos Espinosa-Soto; Pablo Padilla-Longoria; Elena R Alvarez-Buylla
Journal:  Plant Cell       Date:  2004-10-14       Impact factor: 11.277

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